checkTranscriptBoundary()

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4676 ee4ac58c-ac51-4696-9907-e4b3aa274f04

uk/ac/sanger/artemis/components/genebuilder/GeneViewerPanel.java

@@ -20,7 +20,7 @@
  * along with this program; if not, write to the Free Software
  * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
  *
- * $Header: //tmp/pathsoft/artemis/uk/ac/sanger/artemis/components/genebuilder/GeneViewerPanel.java,v 1.27 2006-08-31 12:36:15 tjc Exp $
+ * $Header: //tmp/pathsoft/artemis/uk/ac/sanger/artemis/components/genebuilder/GeneViewerPanel.java,v 1.28 2006-08-31 12:41:57 tjc Exp $
  */
 
 package uk.ac.sanger.artemis.components.genebuilder;
@@ -342,8 +342,19 @@ public class GeneViewerPanel extends JPanel
               "Transcript Selection",
               JOptionPane.ERROR_MESSAGE);
  
-        List transcripts = chado_gene.getTranscripts();
         uk.ac.sanger.artemis.Feature transcript = features.elementAt(0);
+        checkTranscriptBoundary(transcript);
+      }
+    });
+    menu.add(adjustCoords);
+    
+  }
+  
+  
+  private void checkTranscriptBoundary(uk.ac.sanger.artemis.Feature transcript)
+  {
+    List transcripts = chado_gene.getTranscripts();
+
     if(transcripts.contains(transcript.getEmblFeature()))
     {
       Set children = chado_gene.getChildren(transcript.getEmblFeature());
@@ -379,7 +390,6 @@ public class GeneViewerPanel extends JPanel
         // TODO Auto-generated catch block
         e.printStackTrace();
       }
-
     }
     else
       JOptionPane.showMessageDialog(null, 
@@ -387,10 +397,6 @@ public class GeneViewerPanel extends JPanel
           "Transcript Selection",
           JOptionPane.ERROR_MESSAGE);
   }
-    });
-    menu.add(adjustCoords);
-    
-  }
   
   /**
    *