implement getOrganismByCommonName()

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10971 ee4ac58c-ac51-4696-9907-e4b3aa274f04

uk/ac/sanger/artemis/chado/GmodDAO.java

@@ -51,6 +51,7 @@ public abstract class GmodDAO
 {
   private static org.apache.log4j.Logger logger4j = 
     org.apache.log4j.Logger.getLogger(GmodDAO.class);
+
   public abstract List getOrganismsContainingSrcFeatures();
   public abstract List getSimilarityMatchesByFeatureIds(final List featureIds);
   public abstract List getSimilarityMatches(final Integer srcFeatureId);
@@ -267,10 +268,7 @@ public abstract class GmodDAO
    * @param commonName the short name to look up
    * @return the corresponding organism, or null
    */
-  public Organism getOrganismByCommonName(String commonName)
-  {
-    return null;
-  }
+  public abstract Organism getOrganismByCommonName(String commonName);
 
   /**
    * Get a list of the common name of all the organisms.

uk/ac/sanger/artemis/chado/IBatisDAO.java

@@ -692,6 +692,13 @@ public class IBatisDAO extends GmodDAO
     return sqlMap.queryForList("getOrganism", null);
   }
   
+  public Organism getOrganismByCommonName(String commonName)
+  {
+    Organism o = new Organism();
+    o.setCommonName(commonName);
+    return (Organism)sqlMap.queryForObject("getOrganism", o);
+  }
+  
   //////
   ////// PubDaoI
   //////

uk/ac/sanger/artemis/chado/JdbcDAO.java

@@ -2290,4 +2290,9 @@ public class JdbcDAO extends GmodDAO
   {
     
   }
+  
+  public Organism getOrganismByCommonName(String commonName)
+  {
+    return null; 
+  }
 }