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Commit 697cfd95 authored by tjc's avatar tjc
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remove global JMenuItems 

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2140 ee4ac58c-ac51-4696-9907-e4b3aa274f04
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uk/ac/sanger/artemis/components/FeaturePopup.java
+ 180
− 258
View file @ 697cfd95
...@@ -20,7 +20,7 @@ ...@@ -20,7 +20,7 @@
* along with this program; if not, write to the Free Software * along with this program; if not, write to the Free Software
* Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
* *
* $Header: //tmp/pathsoft/artemis/uk/ac/sanger/artemis/components/FeaturePopup.java,v 1.2 2004-11-05 14:22:41 tjc Exp $ * $Header: //tmp/pathsoft/artemis/uk/ac/sanger/artemis/components/FeaturePopup.java,v 1.3 2004-12-17 11:32:49 tjc Exp $
*/ */
package uk.ac.sanger.artemis.components; package uk.ac.sanger.artemis.components;
...@@ -29,8 +29,6 @@ import uk.ac.sanger.artemis.*; ...@@ -29,8 +29,6 @@ import uk.ac.sanger.artemis.*;
import uk.ac.sanger.artemis.util.StringVector; import uk.ac.sanger.artemis.util.StringVector;
import java.io.*; import java.io.*;
import java.awt.MenuItem;
import java.awt.CheckboxMenuItem;
import java.awt.event.*; import java.awt.event.*;
import javax.swing.*; import javax.swing.*;
...@@ -38,13 +36,12 @@ import javax.swing.*; ...@@ -38,13 +36,12 @@ import javax.swing.*;
* FeaturePopup class * FeaturePopup class
* *
* @author Kim Rutherford * @author Kim Rutherford
* @version $Id: FeaturePopup.java,v 1.2 2004-11-05 14:22:41 tjc Exp $ * @version $Id: FeaturePopup.java,v 1.3 2004-12-17 11:32:49 tjc Exp $
* *
**/ **/
public class FeaturePopup extends JPopupMenu public class FeaturePopup extends JPopupMenu
{ {
/** /**
* The reference of the EntryGroup object that was passed to the * The reference of the EntryGroup object that was passed to the
* constructor. * constructor.
...@@ -90,42 +87,6 @@ public class FeaturePopup extends JPopupMenu ...@@ -90,42 +87,6 @@ public class FeaturePopup extends JPopupMenu
* features. * features.
**/ **/
private FeatureSegmentVector selection_segments; private FeatureSegmentVector selection_segments;
private JCheckBoxMenuItem show_labels_item = null;
private JCheckBoxMenuItem one_line_per_entry_item = null;
private JCheckBoxMenuItem show_forward_frame_lines_item = null;
private JCheckBoxMenuItem show_reverse_frame_lines_item = null;
private JCheckBoxMenuItem show_start_codons_item = null;
private JCheckBoxMenuItem show_stop_codons_item = null;
private JCheckBoxMenuItem show_feature_arrows_item = null;
private JCheckBoxMenuItem show_feature_borders_item = null;
private JCheckBoxMenuItem frame_features_item = null;
private JCheckBoxMenuItem source_features_item = null;
private JCheckBoxMenuItem rev_comp_display_item = null;
private JCheckBoxMenuItem base_colours_item = null;
private JCheckBoxMenuItem correlation_scores_item = null;
private JCheckBoxMenuItem show_genes_item = null;
private JCheckBoxMenuItem show_sysid_item = null;
private JCheckBoxMenuItem show_products_item = null;
private JCheckBoxMenuItem show_qualifiers_item = null;
private JMenuItem entry_group_menu_item = null;
private JMenuItem select_menu_item = null;
private JMenuItem add_menu_item = null;
private JMenuItem view_menu_item = null;
private JMenuItem edit_menu_item = null;
private JMenuItem goto_menu_item = null;
private JMenuItem write_menu_item = null;
private JMenuItem run_menu_item = null;
private JMenuItem broadcast_item = null;
private JMenuItem raise_feature_item = null;
private JMenuItem lower_feature_item = null;
private JMenuItem smallest_to_front_item = null;
private JMenuItem zoom_to_selection_item = null;
private JMenuItem score_cutoffs_item = null;
private JMenuItem select_visible_range = null;
private JMenuItem save_feature_list_item = null;
private JMenuItem select_visible_features = null;
private BasePlotGroup base_plot_group = null; private BasePlotGroup base_plot_group = null;
/** /**
...@@ -152,59 +113,44 @@ public class FeaturePopup extends JPopupMenu ...@@ -152,59 +113,44 @@ public class FeaturePopup extends JPopupMenu
selection_features = selection.getSelectedFeatures(); selection_features = selection.getSelectedFeatures();
selection_segments = selection.getSelectedSegments(); selection_segments = selection.getSelectedSegments();
makeSubMenus(); final JMenuItem action_menus[] = makeSubMenus();
JMenuItem feature_display_menus[] = null;
addGenericItems(); JMenuItem feature_list_menus[] = null;
if(owner instanceof FeatureDisplay) if(owner instanceof FeatureDisplay)
{ {
feature_display = (FeatureDisplay)owner; feature_display = (FeatureDisplay)owner;
addFeatureDisplayItems(); feature_display_menus = addFeatureDisplayItems();
for(int i = 0; i<feature_display_menus.length; i++)
if(!(feature_display_menus[i] instanceof JCheckBoxMenuItem))
maybeAdd(feature_display_menus[i]);
} }
else else // must be a FeatureList
{ {
// must be a FeatureList
feature_list = (FeatureList)owner; feature_list = (FeatureList)owner;
addFeatureListItems(); feature_list_menus = addFeatureListItems();
for(int i=0; i<feature_list_menus.length; i++)
if(!(feature_list_menus[i] instanceof JCheckBoxMenuItem))
maybeAdd(feature_list_menus[i]);
} }
maybeAdd(raise_feature_item);
maybeAdd(lower_feature_item);
maybeAdd(smallest_to_front_item);
maybeAdd(zoom_to_selection_item);
maybeAdd(select_visible_range);
maybeAdd(select_visible_features);
maybeAdd(score_cutoffs_item);
maybeAdd(save_feature_list_item);
addSeparator(); addSeparator();
maybeAdd(entry_group_menu_item);
maybeAdd(select_menu_item); for(int i = 0; i<action_menus.length; i++)
maybeAdd(goto_menu_item); maybeAdd(action_menus[i]);
maybeAdd(view_menu_item);
maybeAdd(edit_menu_item);
maybeAdd(add_menu_item);
maybeAdd(write_menu_item);
maybeAdd(run_menu_item);
addSeparator();
maybeAdd(show_labels_item);
maybeAdd(one_line_per_entry_item);
maybeAdd(show_forward_frame_lines_item);
maybeAdd(show_reverse_frame_lines_item);
maybeAdd(show_start_codons_item);
maybeAdd(show_stop_codons_item);
maybeAdd(show_feature_arrows_item);
maybeAdd(show_feature_borders_item);
maybeAdd(frame_features_item);
maybeAdd(source_features_item);
maybeAdd(rev_comp_display_item);
maybeAdd(base_colours_item);
maybeAdd(correlation_scores_item);
maybeAdd(show_genes_item);
maybeAdd(show_sysid_item);
maybeAdd(show_qualifiers_item);
maybeAdd(show_products_item);
addSeparator(); addSeparator();
maybeAdd(broadcast_item); if(owner instanceof FeatureDisplay)
{
for(int i = 0; i<feature_display_menus.length; i++)
if((feature_display_menus[i] instanceof JCheckBoxMenuItem))
maybeAdd(feature_display_menus[i]);
}
else
{
for(int i=0; i<feature_list_menus.length; i++)
if((feature_list_menus[i] instanceof JCheckBoxMenuItem))
maybeAdd(feature_list_menus[i]);
}
} }
/** /**
...@@ -227,191 +173,205 @@ public class FeaturePopup extends JPopupMenu ...@@ -227,191 +173,205 @@ public class FeaturePopup extends JPopupMenu
add(item); add(item);
} }
/**
* Create those menu items that are relevant to all components.
**/
private void addGenericItems()
{
if(selection_features.size() > 0 || selection_segments.size() > 0) {
}
}
/** /**
* Create the Edit, Add and View sub menus. * Create the Edit, Add and View sub menus.
**/ **/
public void makeSubMenus() private JMenuItem[] makeSubMenus()
{ {
final JMenuItem[] action_menus = new JMenuItem[8];
final JFrame frame = owner.getParentFrame(); final JFrame frame = owner.getParentFrame();
entry_group_menu_item = new EntryGroupMenu(frame, getEntryGroup()); action_menus[0] = new EntryGroupMenu(frame, getEntryGroup());
select_menu_item = new SelectMenu(frame, selection, action_menus[1] = new SelectMenu(frame, selection,
getGotoEventSource(), getGotoEventSource(),
getEntryGroup(), getEntryGroup(),
base_plot_group); base_plot_group);
view_menu_item = new ViewMenu(frame, selection, action_menus[2] = new ViewMenu(frame, selection,
getGotoEventSource(), getGotoEventSource(),
getEntryGroup(), getEntryGroup(),
base_plot_group); base_plot_group);
goto_menu_item = new GotoMenu(frame, selection, action_menus[3] = new GotoMenu(frame, selection,
getGotoEventSource(), getGotoEventSource(),
getEntryGroup()); getEntryGroup());
if(Options.readWritePossible()) if(Options.readWritePossible())
{ {
edit_menu_item = new EditMenu(frame, selection, action_menus[4] = new EditMenu(frame, selection,
getGotoEventSource(), getGotoEventSource(),
getEntryGroup(), getEntryGroup(),
base_plot_group); base_plot_group);
if(entry_group instanceof SimpleEntryGroup) if(entry_group instanceof SimpleEntryGroup)
add_menu_item = new AddMenu(frame, selection, action_menus[5] = new AddMenu(frame, selection,
getEntryGroup(), getEntryGroup(),
getGotoEventSource(), getGotoEventSource(),
base_plot_group); base_plot_group);
write_menu_item = new WriteMenu(frame, selection, action_menus[6] = new WriteMenu(frame, selection,
getEntryGroup()); getEntryGroup());
if(Options.isUnixHost()) if(Options.isUnixHost())
run_menu_item = new RunMenu(frame, selection); action_menus[7] = new RunMenu(frame, selection);
} }
return action_menus;
} }
/** /**
* Create those menu items that are relevant only to FeatureDisplay objects. * Create those menu items that are relevant only to FeatureDisplay objects.
**/ **/
private void addFeatureDisplayItems() private JMenuItem[] addFeatureDisplayItems()
{ {
show_start_codons_item = new JCheckBoxMenuItem("Start Codons"); final JMenuItem[] feature_display_menus = new JMenuItem[19];
show_start_codons_item.setState(feature_display.getShowStartCodons());
show_start_codons_item.addItemListener(new ItemListener() feature_display_menus[0] = new JCheckBoxMenuItem("Start Codons");
((JCheckBoxMenuItem)feature_display_menus[0]).setState(
feature_display.getShowStartCodons());
feature_display_menus[0].addItemListener(new ItemListener()
{ {
public void itemStateChanged(ItemEvent event) public void itemStateChanged(ItemEvent event)
{ {
feature_display.setShowStartCodons(show_start_codons_item.getState()); feature_display.setShowStartCodons(
((JCheckBoxMenuItem)feature_display_menus[0]).getState());
} }
}); });
show_stop_codons_item = new JCheckBoxMenuItem("Stop Codons"); feature_display_menus[1] = new JCheckBoxMenuItem("Stop Codons");
show_stop_codons_item.setState(feature_display.getShowStopCodons()); ((JCheckBoxMenuItem)feature_display_menus[1]).setState(
show_stop_codons_item.addItemListener(new ItemListener() feature_display.getShowStopCodons());
feature_display_menus[1].addItemListener(new ItemListener()
{ {
public void itemStateChanged(ItemEvent event) public void itemStateChanged(ItemEvent event)
{ {
feature_display.setShowStopCodons(show_stop_codons_item.getState()); feature_display.setShowStopCodons(
((JCheckBoxMenuItem)feature_display_menus[1]).getState());
} }
}); });
show_feature_arrows_item = new JCheckBoxMenuItem("Feature Arrows"); feature_display_menus[2] = new JCheckBoxMenuItem("Feature Arrows");
show_feature_arrows_item.setState(feature_display.getShowFeatureArrows()); ((JCheckBoxMenuItem)feature_display_menus[2]).setState(
show_feature_arrows_item.addItemListener(new ItemListener() feature_display.getShowFeatureArrows());
feature_display_menus[2].addItemListener(new ItemListener()
{ {
public void itemStateChanged(ItemEvent event) public void itemStateChanged(ItemEvent event)
{ {
feature_display.setShowFeatureArrows(show_feature_arrows_item.getState()); feature_display.setShowFeatureArrows(
((JCheckBoxMenuItem)feature_display_menus[2]).getState());
} }
}); });
show_feature_borders_item = new JCheckBoxMenuItem("Feature Borders"); feature_display_menus[3] = new JCheckBoxMenuItem("Feature Borders");
show_feature_borders_item.setState(feature_display.getShowFeatureBorders()); ((JCheckBoxMenuItem)feature_display_menus[3]).setState(
show_feature_borders_item.addItemListener(new ItemListener() feature_display.getShowFeatureBorders());
feature_display_menus[3].addItemListener(new ItemListener()
{ {
public void itemStateChanged(ItemEvent event) public void itemStateChanged(ItemEvent event)
{ {
feature_display.setShowFeatureBorders(show_feature_borders_item.getState()); feature_display.setShowFeatureBorders(
((JCheckBoxMenuItem)feature_display_menus[3]).getState());
} }
}); });
show_labels_item = new JCheckBoxMenuItem("Feature Labels"); feature_display_menus[4] = new JCheckBoxMenuItem("Feature Labels");
show_labels_item.setState(feature_display.getShowLabels()); ((JCheckBoxMenuItem)feature_display_menus[4]).setState(feature_display.getShowLabels());
show_labels_item.addItemListener(new ItemListener() feature_display_menus[4].addItemListener(new ItemListener()
{ {
public void itemStateChanged(ItemEvent e) public void itemStateChanged(ItemEvent e)
{ {
feature_display.setShowLabels(show_labels_item.getState()); feature_display.setShowLabels(
((JCheckBoxMenuItem)feature_display_menus[4]).getState());
} }
}); });
one_line_per_entry_item = new JCheckBoxMenuItem("One Line Per Entry"); feature_display_menus[5] = new JCheckBoxMenuItem("One Line Per Entry");
one_line_per_entry_item.setState(feature_display.getOneLinePerEntryFlag()); ((JCheckBoxMenuItem)feature_display_menus[5]).setState(
one_line_per_entry_item.addItemListener(new ItemListener() feature_display.getOneLinePerEntryFlag());
feature_display_menus[5].addItemListener(new ItemListener()
{ {
public void itemStateChanged(ItemEvent e) public void itemStateChanged(ItemEvent e)
{ {
final boolean new_state = one_line_per_entry_item.getState(); final boolean new_state =
((JCheckBoxMenuItem)feature_display_menus[5]).getState();
if(new_state && getEntryGroup().size() > 8) if(new_state && getEntryGroup().size() > 8)
feature_display.setShowLabels(false); feature_display.setShowLabels(false);
feature_display.setOneLinePerEntry(new_state); feature_display.setOneLinePerEntry(new_state);
} }
}); });
show_forward_frame_lines_item = feature_display_menus[6] = new JCheckBoxMenuItem("Forward Frame Lines");
new JCheckBoxMenuItem("Forward Frame Lines"); ((JCheckBoxMenuItem)feature_display_menus[6]).setState(
show_forward_frame_lines_item.setState(feature_display.getShowForwardFrameLines()); feature_display.getShowForwardFrameLines());
show_forward_frame_lines_item.addItemListener(new ItemListener() feature_display_menus[6].addItemListener(new ItemListener()
{ {
public void itemStateChanged(ItemEvent e) public void itemStateChanged(ItemEvent e)
{ {
feature_display.setShowForwardFrameLines(show_forward_frame_lines_item.getState()); feature_display.setShowForwardFrameLines(
((JCheckBoxMenuItem)feature_display_menus[6]).getState());
} }
}); });
show_reverse_frame_lines_item = feature_display_menus[7] = new JCheckBoxMenuItem("Reverse Frame Lines");
new JCheckBoxMenuItem("Reverse Frame Lines"); ((JCheckBoxMenuItem)feature_display_menus[7]).setState(
show_reverse_frame_lines_item.setState(feature_display.getShowReverseFrameLines()); feature_display.getShowReverseFrameLines());
show_reverse_frame_lines_item.addItemListener(new ItemListener() feature_display_menus[7].addItemListener(new ItemListener()
{ {
public void itemStateChanged(ItemEvent e) public void itemStateChanged(ItemEvent e)
{ {
feature_display.setShowReverseFrameLines(show_reverse_frame_lines_item.getState()); feature_display.setShowReverseFrameLines(
((JCheckBoxMenuItem)feature_display_menus[7]).getState());
} }
}); });
frame_features_item = new JCheckBoxMenuItem("All Features On Frame Lines"); feature_display_menus[8] = new JCheckBoxMenuItem("All Features On Frame Lines");
frame_features_item.setState(feature_display.getFrameFeaturesFlag()); ((JCheckBoxMenuItem)feature_display_menus[8]).setState(
frame_features_item.addItemListener(new ItemListener() feature_display.getFrameFeaturesFlag());
feature_display_menus[8].addItemListener(new ItemListener()
{ {
public void itemStateChanged(ItemEvent e) public void itemStateChanged(ItemEvent e)
{ {
feature_display.setFrameFeaturesFlag(frame_features_item.getState()); feature_display.setFrameFeaturesFlag(
((JCheckBoxMenuItem)feature_display_menus[8]).getState());
} }
}); });
source_features_item = new JCheckBoxMenuItem("Show Source Features"); feature_display_menus[9] = new JCheckBoxMenuItem("Show Source Features");
source_features_item.setState(feature_display.getShowSourceFeatures()); ((JCheckBoxMenuItem)feature_display_menus[9]).setState(
source_features_item.addItemListener(new ItemListener() feature_display.getShowSourceFeatures());
feature_display_menus[9].addItemListener(new ItemListener()
{ {
public void itemStateChanged(ItemEvent e) public void itemStateChanged(ItemEvent e)
{ {
feature_display.setShowSourceFeatures(source_features_item.getState()); feature_display.setShowSourceFeatures(
((JCheckBoxMenuItem)feature_display_menus[9]).getState());
} }
}); });
rev_comp_display_item = new JCheckBoxMenuItem("Flip Display"); feature_display_menus[10] = new JCheckBoxMenuItem("Flip Display");
((JCheckBoxMenuItem)feature_display_menus[10]).setState(
rev_comp_display_item.setState(feature_display.isRevCompDisplay()); feature_display.isRevCompDisplay());
rev_comp_display_item.addItemListener(new ItemListener() feature_display_menus[10].addItemListener(new ItemListener()
{ {
public void itemStateChanged(ItemEvent e) public void itemStateChanged(ItemEvent e)
{ {
feature_display.setRevCompDisplay(rev_comp_display_item.getState()); feature_display.setRevCompDisplay(
((JCheckBoxMenuItem)feature_display_menus[10]).getState());
} }
}); });
base_colours_item = new JCheckBoxMenuItem("Colourise Bases"); feature_display_menus[11] = new JCheckBoxMenuItem("Colourise Bases");
base_colours_item.setState(feature_display.getShowBaseColours()); ((JCheckBoxMenuItem)feature_display_menus[11]).setState(
base_colours_item.addItemListener(new ItemListener() feature_display.getShowBaseColours());
feature_display_menus[11].addItemListener(new ItemListener()
{ {
public void itemStateChanged(ItemEvent e) public void itemStateChanged(ItemEvent e)
{ {
feature_display.setShowBaseColours(base_colours_item.getState()); feature_display.setShowBaseColours(
((JCheckBoxMenuItem)feature_display_menus[11]).getState());
} }
}); });
smallest_to_front_item = feature_display_menus[12] = new JMenuItem("Smallest Features In Front");
new JMenuItem("Smallest Features In Front"); feature_display_menus[12].addActionListener(new ActionListener()
smallest_to_front_item.addActionListener(new ActionListener()
{ {
public void actionPerformed(ActionEvent e) public void actionPerformed(ActionEvent e)
{ {
...@@ -422,9 +382,8 @@ public class FeaturePopup extends JPopupMenu ...@@ -422,9 +382,8 @@ public class FeaturePopup extends JPopupMenu
} }
}); });
score_cutoffs_item = new JMenuItem("Set Score Cutoffs ..."); feature_display_menus[13] = new JMenuItem("Set Score Cutoffs ...");
feature_display_menus[13].addActionListener(new ActionListener()
score_cutoffs_item.addActionListener(new ActionListener()
{ {
public void actionPerformed(ActionEvent e) public void actionPerformed(ActionEvent e)
{ {
...@@ -457,8 +416,8 @@ public class FeaturePopup extends JPopupMenu ...@@ -457,8 +416,8 @@ public class FeaturePopup extends JPopupMenu
if(selection_features.size() > 0 || selection_segments.size() > 0) if(selection_features.size() > 0 || selection_segments.size() > 0)
{ {
raise_feature_item = new JMenuItem("Raise Selected Features"); feature_display_menus[14] = new JMenuItem("Raise Selected Features");
raise_feature_item.addActionListener(new ActionListener() feature_display_menus[14].addActionListener(new ActionListener()
{ {
public void actionPerformed(ActionEvent event) public void actionPerformed(ActionEvent event)
{ {
...@@ -466,8 +425,8 @@ public class FeaturePopup extends JPopupMenu ...@@ -466,8 +425,8 @@ public class FeaturePopup extends JPopupMenu
} }
}); });
lower_feature_item = new JMenuItem("Lower Selected Features"); feature_display_menus[15] = new JMenuItem("Lower Selected Features");
lower_feature_item.addActionListener(new ActionListener() feature_display_menus[15].addActionListener(new ActionListener()
{ {
public void actionPerformed(ActionEvent event) public void actionPerformed(ActionEvent event)
{ {
...@@ -478,8 +437,8 @@ public class FeaturePopup extends JPopupMenu ...@@ -478,8 +437,8 @@ public class FeaturePopup extends JPopupMenu
if(!selection.isEmpty()) if(!selection.isEmpty())
{ {
zoom_to_selection_item = new JMenuItem("Zoom to Selection"); feature_display_menus[16] = new JMenuItem("Zoom to Selection");
zoom_to_selection_item.addActionListener(new ActionListener() feature_display_menus[16].addActionListener(new ActionListener()
{ {
public void actionPerformed(ActionEvent event) public void actionPerformed(ActionEvent event)
{ {
...@@ -488,10 +447,8 @@ public class FeaturePopup extends JPopupMenu ...@@ -488,10 +447,8 @@ public class FeaturePopup extends JPopupMenu
}); });
} }
feature_display_menus[17] = new JMenuItem("Select Visible Range");
select_visible_range = feature_display_menus[17].addActionListener(new ActionListener()
new JMenuItem("Select Visible Range");
select_visible_range.addActionListener(new ActionListener()
{ {
public void actionPerformed(ActionEvent e) public void actionPerformed(ActionEvent e)
{ {
...@@ -499,24 +456,28 @@ public class FeaturePopup extends JPopupMenu ...@@ -499,24 +456,28 @@ public class FeaturePopup extends JPopupMenu
} }
}); });
select_visible_features = feature_display_menus[18] = new JMenuItem("Select Visible Features");
new JMenuItem("Select Visible Features"); feature_display_menus[18].addActionListener(new ActionListener()
select_visible_features.addActionListener(new ActionListener() { {
public void actionPerformed(ActionEvent e) { public void actionPerformed(ActionEvent e)
{
selection.set(feature_display.getCurrentVisibleFeatures()); selection.set(feature_display.getCurrentVisibleFeatures());
} }
}); });
return feature_display_menus;
} }
/** /**
* Create those menu items that are relevant only to FeatureList objects. * Create those menu items that are relevant only to FeatureList objects.
**/ **/
private void addFeatureListItems() private JMenuItem[] addFeatureListItems()
{ {
final JMenuItem feature_list_menus[] = new JMenuItem[6];
if(Options.getOptions().readWritePossible()) if(Options.getOptions().readWritePossible())
{ {
save_feature_list_item = new JMenuItem("Save List To File ..."); feature_list_menus[0] = new JMenuItem("Save List To File ...");
save_feature_list_item.addActionListener(new ActionListener() feature_list_menus[0].addActionListener(new ActionListener()
{ {
public void actionPerformed(ActionEvent e) public void actionPerformed(ActionEvent e)
{ {
...@@ -525,73 +486,82 @@ public class FeaturePopup extends JPopupMenu ...@@ -525,73 +486,82 @@ public class FeaturePopup extends JPopupMenu
}); });
} }
correlation_scores_item = new JCheckBoxMenuItem("Show Correlation Scores"); feature_list_menus[1] = new JCheckBoxMenuItem("Show Correlation Scores");
correlation_scores_item.setState(feature_list.getCorrelationScores()); ((JCheckBoxMenuItem)feature_list_menus[1]).setState(
correlation_scores_item.addItemListener(new ItemListener() feature_list.getCorrelationScores());
feature_list_menus[1].addItemListener(new ItemListener()
{ {
public void itemStateChanged(ItemEvent e) public void itemStateChanged(ItemEvent e)
{ {
feature_list.setCorrelationScores(correlation_scores_item.getState()); feature_list.setCorrelationScores(
((JCheckBoxMenuItem)feature_list_menus[1]).getState());
} }
}); });
show_genes_item = new JCheckBoxMenuItem("Show Gene Names"); feature_list_menus[2] = new JCheckBoxMenuItem("Show Gene Names");
show_genes_item.setState(feature_list.getShowGenes()); ((JCheckBoxMenuItem)feature_list_menus[2]).setState(feature_list.getShowGenes());
show_genes_item.addItemListener(new ItemListener() feature_list_menus[2].addItemListener(new ItemListener()
{ {
public void itemStateChanged(ItemEvent e) public void itemStateChanged(ItemEvent e)
{ {
if(show_sysid_item.getState() && show_genes_item.getState()) boolean show_sysid = ((JCheckBoxMenuItem)feature_list_menus[3]).getState();
boolean show_genes = ((JCheckBoxMenuItem)feature_list_menus[2]).getState();
if(show_sysid && show_genes)
{ {
show_sysid_item.setState(false); ((JCheckBoxMenuItem)feature_list_menus[3]).setState(false);
feature_list.setShowSystematicID(show_sysid_item.getState()); feature_list.setShowSystematicID(false);
} }
feature_list.setShowGenes(show_genes_item.getState()); feature_list.setShowGenes(show_genes);
} }
}); });
show_sysid_item = new JCheckBoxMenuItem("Show Systematic ID"); feature_list_menus[3] = new JCheckBoxMenuItem("Show Systematic ID");
show_sysid_item.setState(feature_list.getShowSysID()); ((JCheckBoxMenuItem)feature_list_menus[3]).setState(feature_list.getShowSysID());
show_sysid_item.addItemListener(new ItemListener() feature_list_menus[3].addItemListener(new ItemListener()
{ {
public void itemStateChanged(ItemEvent e) public void itemStateChanged(ItemEvent e)
{ {
boolean show_sysid = ((JCheckBoxMenuItem)feature_list_menus[3]).getState();
if(show_genes_item.getState() && show_sysid_item.getState()) boolean show_genes = ((JCheckBoxMenuItem)feature_list_menus[2]).getState();
if(show_genes && show_sysid)
{ {
show_genes_item.setState(false); ((JCheckBoxMenuItem)feature_list_menus[2]).setState(false);
feature_list.setShowGenes(show_genes_item.getState()); feature_list.setShowGenes(false);
} }
feature_list.setShowSystematicID(show_sysid_item.getState()); feature_list.setShowSystematicID(show_sysid);
} }
}); });
show_products_item = new JCheckBoxMenuItem("Show Products"); feature_list_menus[4] = new JCheckBoxMenuItem("Show Products");
show_products_item.setState(feature_list.getShowProducts()); ((JCheckBoxMenuItem)feature_list_menus[4]).setState(feature_list.getShowProducts());
show_products_item.addItemListener(new ItemListener() feature_list_menus[4].addItemListener(new ItemListener()
{ {
public void itemStateChanged(ItemEvent e) public void itemStateChanged(ItemEvent e)
{ {
if(show_products_item.getState()) boolean show_products = ((JCheckBoxMenuItem)feature_list_menus[4]).getState();
if(show_products)
feature_list.setShowQualifiers(false); feature_list.setShowQualifiers(false);
feature_list.setShowProducts(show_products_item.getState()); feature_list.setShowProducts(show_products);
} }
}); });
show_qualifiers_item = new JCheckBoxMenuItem("Show Qualifiers"); feature_list_menus[5] = new JCheckBoxMenuItem("Show Qualifiers");
show_qualifiers_item.setState(feature_list.getShowQualifiers()); ((JCheckBoxMenuItem)feature_list_menus[5]).setState(feature_list.getShowQualifiers());
show_qualifiers_item.addItemListener(new ItemListener() feature_list_menus[5].addItemListener(new ItemListener()
{ {
public void itemStateChanged(ItemEvent e) public void itemStateChanged(ItemEvent e)
{ {
feature_list.setShowQualifiers(show_qualifiers_item.getState()); boolean show_qualifiers = ((JCheckBoxMenuItem)feature_list_menus[5]).getState();
if(show_qualifiers_item.getState()) feature_list.setShowQualifiers(show_qualifiers);
if(show_qualifiers)
feature_list.setShowProducts(false); feature_list.setShowProducts(false);
} }
}); });
return feature_list_menus;
} }
/** /**
...@@ -732,52 +702,4 @@ public class FeaturePopup extends JPopupMenu ...@@ -732,52 +702,4 @@ public class FeaturePopup extends JPopupMenu
return goto_event_source; return goto_event_source;
} }
/**
* Return a new CheckboxMenuItem unless the VM is 1.2 or worse(ie. 1.3 or
* 1.4) on GNU/Linux, in which case return a new ArtemisCheckboxMenuItem
**/
private MenuItem makeCheckboxMenuItem(final String item_name)
{
if(Options.getOptions().isBuggyLinuxVM() &&
Options.getOptions().getPropertyTruthValue("buggy_linux_vm_fix"))
return new ArtemisCheckboxMenuItem(item_name);
else
return new CheckboxMenuItem(item_name);
}
/**
* Add a ItemListener to a ArtemisCheckboxMenuItem or a CheckboxMenuItem.
**/
private void addMenuItemListener(final MenuItem menu_item,
final ItemListener listener)
{
if(menu_item instanceof ArtemisCheckboxMenuItem)
((ArtemisCheckboxMenuItem)menu_item).addItemListener(listener);
else
((CheckboxMenuItem)menu_item).addItemListener(listener);
}
/**
* Set the state of a ArtemisCheckboxMenuItem or a CheckboxMenuItem.
**/
private void setCheckboxMenuItemState(final MenuItem menu_item,
final boolean state)
{
if(menu_item instanceof ArtemisCheckboxMenuItem)
((ArtemisCheckboxMenuItem)menu_item).setState(state);
else
((CheckboxMenuItem)menu_item).setState(state);
}
/**
* Get the state of a ArtemisCheckboxMenuItem or a CheckboxMenuItem.
**/
private boolean getCheckboxMenuItemState(final MenuItem menu_item)
{
if(menu_item instanceof ArtemisCheckboxMenuItem)
return((ArtemisCheckboxMenuItem)menu_item).getState();
else
return((CheckboxMenuItem)menu_item).getState();
}
} }
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