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Commit 69fa86dc authored by tjc's avatar tjc
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tidy

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3638 ee4ac58c-ac51-4696-9907-e4b3aa274f04
parent 34100e39
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...@@ -20,7 +20,7 @@ ...@@ -20,7 +20,7 @@
* along with this program; if not, write to the Free Software * along with this program; if not, write to the Free Software
* Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
* *
* $Header: //tmp/pathsoft/artemis/uk/ac/sanger/artemis/io/StreamSequence.java,v 1.8 2005-09-01 10:50:43 tjc Exp $ * $Header: //tmp/pathsoft/artemis/uk/ac/sanger/artemis/io/StreamSequence.java,v 1.9 2005-09-02 16:25:50 tjc Exp $
*/ */
package uk.ac.sanger.artemis.io; package uk.ac.sanger.artemis.io;
...@@ -35,7 +35,7 @@ import java.io.Writer; ...@@ -35,7 +35,7 @@ import java.io.Writer;
* Sequence stored in 4 bit chunks. * Sequence stored in 4 bit chunks.
* *
* @author Kim Rutherford * @author Kim Rutherford
* @version $Id: StreamSequence.java,v 1.8 2005-09-01 10:50:43 tjc Exp $ * @version $Id: StreamSequence.java,v 1.9 2005-09-02 16:25:50 tjc Exp $
**/ **/
public abstract class StreamSequence public abstract class StreamSequence
...@@ -129,7 +129,7 @@ public abstract class StreamSequence ...@@ -129,7 +129,7 @@ public abstract class StreamSequence
// int packStart = Math.round( (float)start/2.f ) - 1; // int packStart = Math.round( (float)start/2.f ) - 1;
int packStart = (start - 1) >> 1; int packStart = (start - 1) >> 1;
int packEnd = end/2; // Math.round( (float)end/2.f ); int packEnd = Math.round( (float)end/2.f ); // end/2;
int count = 0; int count = 0;
byte currStorageUnit; byte currStorageUnit;
...@@ -158,9 +158,9 @@ public abstract class StreamSequence ...@@ -158,9 +158,9 @@ public abstract class StreamSequence
} }
catch(ArrayIndexOutOfBoundsException oob) catch(ArrayIndexOutOfBoundsException oob)
{ {
System.out.println("start "+start+" end "+end+" packStart "+packStart+" packEnd "+packEnd); // System.out.println("start "+start+" end "+end+" packStart "+packStart+" packEnd "+packEnd);
System.out.println("count "+count+" this_dst.length "+this_dst.length+" index2 "+index2); // System.out.println("count "+count+" this_dst.length "+this_dst.length+" index2 "+index2);
oob.printStackTrace(); // oob.printStackTrace();
} }
count++; count++;
......
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