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Commit 74a592a4 authored by tcarver's avatar tcarver
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add more functionality

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uk/ac/sanger/artemis/components/ProjectProperty.java
+ 227
− 53
View file @ 74a592a4
/* ProjectProperty.java /* ProjectProperty
* This file is part of Artemis * This file is part of Artemis
* *
* Copyright(C) 2012 Genome Research Limited * Copyright(C) 2012 Genome Research Limited
...@@ -21,12 +21,16 @@ ...@@ -21,12 +21,16 @@
package uk.ac.sanger.artemis.components; package uk.ac.sanger.artemis.components;
import java.awt.BorderLayout; import java.awt.BorderLayout;
import java.awt.Color;
import java.awt.Dimension; import java.awt.Dimension;
import java.awt.Font;
import java.awt.GridBagConstraints; import java.awt.GridBagConstraints;
import java.awt.event.ActionEvent; import java.awt.event.ActionEvent;
import java.awt.event.ActionListener; import java.awt.event.ActionListener;
import java.io.File;
import java.io.IOException; import java.io.IOException;
import java.io.InputStream; import java.io.InputStream;
import java.net.URISyntaxException;
import java.util.HashMap; import java.util.HashMap;
import java.util.Properties; import java.util.Properties;
...@@ -36,10 +40,17 @@ import java.util.Set; ...@@ -36,10 +40,17 @@ import java.util.Set;
import javax.swing.BorderFactory; import javax.swing.BorderFactory;
import javax.swing.Box; import javax.swing.Box;
import javax.swing.DefaultListModel;
import javax.swing.JButton; import javax.swing.JButton;
import javax.swing.JComboBox;
import javax.swing.JFrame; import javax.swing.JFrame;
import javax.swing.JList; import javax.swing.JList;
import javax.swing.JMenu;
import javax.swing.JMenuBar;
import javax.swing.JMenuItem;
import javax.swing.JOptionPane;
import javax.swing.JPanel; import javax.swing.JPanel;
import javax.swing.JScrollPane;
import javax.swing.ListSelectionModel; import javax.swing.ListSelectionModel;
import javax.swing.SwingUtilities; import javax.swing.SwingUtilities;
import javax.swing.border.Border; import javax.swing.border.Border;
...@@ -48,8 +59,18 @@ import javax.swing.event.ListSelectionEvent; ...@@ -48,8 +59,18 @@ import javax.swing.event.ListSelectionEvent;
import javax.swing.event.ListSelectionListener; import javax.swing.event.ListSelectionListener;
import uk.ac.sanger.artemis.components.genebuilder.TextAreaDocumentListener; import uk.ac.sanger.artemis.components.genebuilder.TextAreaDocumentListener;
import uk.ac.sanger.artemis.util.Document;
import uk.ac.sanger.artemis.util.FileDocument;
class ProjectProperty extends JFrame /**
* Project file management system using a properties file.
*
* Example of the syntax for defining a project in the property file:
* project.Pknowlsei.ref = Pknowlsei:Pk_strainH_chr01
* project.Pknowlsei.chado = genedb-db.sanger.ac.uk:5432/snapshot?genedb_ro
* project.Pknowlsei.title = Pknowlsei
*/
public class ProjectProperty extends JFrame
{ {
private static final long serialVersionUID = 1L; private static final long serialVersionUID = 1L;
private HashMap<String, HashMap<String, String>> projects; private HashMap<String, HashMap<String, String>> projects;
...@@ -58,22 +79,63 @@ class ProjectProperty extends JFrame ...@@ -58,22 +79,63 @@ class ProjectProperty extends JFrame
private final static int ANNOTATION = 2; private final static int ANNOTATION = 2;
private final static int NEXT_GEN_DATA = 3; private final static int NEXT_GEN_DATA = 3;
private final static int CHADO = 4; private final static int CHADO = 4;
private static org.apache.log4j.Logger logger4j =
org.apache.log4j.Logger.getLogger(ProjectProperty.class);
private final static String[] TYPES =
{ "title", "ref", "annotation", "bam", "vcf", "chado" };
ProjectProperty() public ProjectProperty()
{ {
final InputStream ins = super("Project File Manager");
InputStream ins =
this.getClass().getClassLoader().getResourceAsStream("etc/project.properties"); this.getClass().getClassLoader().getResourceAsStream("etc/project.properties");
try
{
logger4j.debug("Reading properties from: "+
this.getClass().getClassLoader().getResource("etc/project.properties").toURI());
}
catch (URISyntaxException e1){}
final Properties projectProps = new Properties(); final Properties projectProps = new Properties();
try try
{ {
projectProps.load(ins); projectProps.load(ins);
ins.close(); ins.close();
projects = getProjectMap(projectProps);
} }
catch (IOException e) catch (IOException e)
{ {
e.printStackTrace(); e.printStackTrace();
} }
final String [] propFiles =
{
"project.properties",
System.getProperty("user.home") + File.separator + ".project.properties"
};
for(int i=0; i<propFiles.length; i++)
{
final Document doc =
new FileDocument(new File(propFiles[i]));
if(doc.readable())
{
try
{
ins = doc.getInputStream();
projectProps.load(ins);
}
catch (IOException e)
{
e.printStackTrace();
}
logger4j.debug("Reading properties from: "+propFiles[i]);
}
}
projects = getProjectMap(projectProps);
createProjectViewer((JPanel) getContentPane()); createProjectViewer((JPanel) getContentPane());
pack(); pack();
setVisible(true); setVisible(true);
...@@ -81,77 +143,189 @@ class ProjectProperty extends JFrame ...@@ -81,77 +143,189 @@ class ProjectProperty extends JFrame
private void createProjectViewer(JPanel panel) private void createProjectViewer(JPanel panel)
{ {
final DefaultListModel model = new DefaultListModel();
final JList projectList = new JList(model);
final JScrollPane jspList = new JScrollPane(projectList);
Object[] items = projects.keySet().toArray();
for (int i=0; i<items.length; i++)
model.add(i, items[i]);
final Box yBox = Box.createVerticalBox();
final LaunchActionListener listener = new LaunchActionListener();
projectList.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);
projectList.setVisibleRowCount(-1);
panel.add(jspList, BorderLayout.WEST);
panel.add(yBox, BorderLayout.CENTER);
// menus
final JMenuBar menuBar = new JMenuBar();
setJMenuBar(menuBar);
final JMenu fileMenu = new JMenu("File");
menuBar.add(fileMenu);
final JMenuItem exitMenu = new JMenuItem("Exit");
fileMenu.add(exitMenu);
exitMenu.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent arg0)
{
int status = JOptionPane.showConfirmDialog(
ProjectProperty.this, "Exit?", "Exit", JOptionPane.YES_NO_OPTION);
if(status == JOptionPane.YES_OPTION)
Splash.exitApp();
}
});
final JMenu editMenu = new JMenu("Edit");
menuBar.add(editMenu);
final JMenuItem addProject = new JMenuItem("Add Project");
addProject.addActionListener(new ActionListener(){
public void actionPerformed(ActionEvent arg0)
{
String projName =
JOptionPane.showInputDialog(ProjectProperty.this,
"Project Name", "New Project", JOptionPane.QUESTION_MESSAGE);
if(projName == null)
return;
projects.put(projName, new HashMap<String, String>());
model.add(model.getSize(), projName);
projectList.repaint();
}
});
editMenu.add(addProject);
final JMenuItem removeProject = new JMenuItem("Remove Project");
removeProject.addActionListener(new ActionListener(){
public void actionPerformed(ActionEvent arg0)
{
projects.remove(projectList.getSelectedValue());
model.remove(projectList.getSelectedIndex());
projectList.repaint();
yBox.removeAll();
yBox.repaint();
}
});
editMenu.add(removeProject);
//
panel.setPreferredSize(new Dimension(650,400)); panel.setPreferredSize(new Dimension(650,400));
panel.setBackground(Color.WHITE);
final JButton openArt = new JButton("OPEN"); final JButton openArt = new JButton("OPEN");
final LaunchActionListener listener = new LaunchActionListener();
openArt.addActionListener(listener); openArt.addActionListener(listener);
panel.add(openArt, BorderLayout.SOUTH); panel.add(openArt, BorderLayout.SOUTH);
final JList projectList = new JList(projects.keySet().toArray());
projectList.setSelectionMode(ListSelectionModel.SINGLE_INTERVAL_SELECTION);
panel.add(projectList, BorderLayout.WEST);
final GridBagConstraints c = new GridBagConstraints(); final GridBagConstraints c = new GridBagConstraints();
c.anchor = GridBagConstraints.NORTHWEST; c.anchor = GridBagConstraints.NORTHWEST;
c.fill = GridBagConstraints.VERTICAL; c.fill = GridBagConstraints.VERTICAL;
c.ipadx = 10; c.ipadx = 10;
c.ipady = 10; c.ipady = 10;
final Box props = Box.createVerticalBox();
projectList.addListSelectionListener(new ListSelectionListener() projectList.addListSelectionListener(new ListSelectionListener()
{ {
public void valueChanged(ListSelectionEvent e) public void valueChanged(ListSelectionEvent e)
{ {
if(e.getValueIsAdjusting() == false) if(e.getValueIsAdjusting() == false &&
projectList.getSelectedIndex() > -1)
refreshProperties(projectList, yBox, listener);
}
});
}
/**
* Refresh components in the properties panel.
* @param projectList
* @param yBox
* @param listener
*/
private void refreshProperties(final JList projectList,
final Box yBox,
final LaunchActionListener listener)
{
yBox.removeAll();
final HashMap<String, String> projProps = projects.get(projectList.getSelectedValue());
final HashMap<Integer, QualifierTextArea> settings = new HashMap<Integer, QualifierTextArea>();
for(final String key: projProps.keySet())
{
Box xBox = Box.createHorizontalBox();
final QualifierTextArea qta = new QualifierTextArea();
Border loweredbevel = BorderFactory.createLoweredBevelBorder();
TitledBorder title = BorderFactory.createTitledBorder(
loweredbevel, key);
title.setTitlePosition(TitledBorder.ABOVE_TOP);
qta.setBorder(title);
qta.setText(projProps.get(key));
qta.getDocument().addDocumentListener(
new TextAreaDocumentListener(qta));
xBox.add(qta);
// REMOVE PROPERTY
final JButton removeProperty = new JButton("X");
removeProperty.setOpaque(false);
Font font = removeProperty.getFont().deriveFont(Font.BOLD);
removeProperty.setFont(font);
removeProperty.setToolTipText("REMOVE");
removeProperty.setForeground(new Color(139, 35, 35));
removeProperty.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
{
projProps.remove(key);
refreshProperties(projectList, yBox, listener);
}
});
xBox.add(removeProperty);
//
yBox.add(xBox);
if(key.equals("ref"))
settings.put(ProjectProperty.REFERENCE, qta);
else if(key.equals("annotation"))
settings.put(ProjectProperty.ANNOTATION, qta);
else if(key.equals("bam") || key.equals("vcf") || key.equals("bcf"))
settings.put(ProjectProperty.NEXT_GEN_DATA, qta);
else if(key.equals("chado"))
settings.put(ProjectProperty.CHADO, qta);
}
// ADD property
Box xBox = Box.createHorizontalBox();
final JButton addPropertyButton = new JButton("NEW PROPERTY");
final JComboBox propertyList = new JComboBox(TYPES);
xBox.add(addPropertyButton);
xBox.add(propertyList);
xBox.add(Box.createHorizontalGlue());
yBox.add(xBox);
addPropertyButton.addActionListener(new ActionListener(){
public void actionPerformed(ActionEvent arg0)
{
String key = (String) propertyList.getSelectedItem();
if(!projProps.containsKey(key))
{ {
if(projectList.getSelectedIndex() > -1) projProps.put(key, "");
{ refreshProperties(projectList, yBox, listener);
props.removeAll();
final HashMap<String, String> projProps = projects.get(projectList.getSelectedValue());
final HashMap<Integer, QualifierTextArea> settings = new HashMap<Integer, QualifierTextArea>();
for(String key: projProps.keySet())
{
Box xBox = Box.createHorizontalBox();
final QualifierTextArea qta = new QualifierTextArea();
Border loweredbevel = BorderFactory.createLoweredBevelBorder();
TitledBorder title = BorderFactory.createTitledBorder(
loweredbevel, key);
title.setTitlePosition(TitledBorder.ABOVE_TOP);
qta.setBorder(title);
qta.setText(projProps.get(key));
qta.getDocument().addDocumentListener(
new TextAreaDocumentListener(qta));
xBox.add(qta);
props.add(xBox);
if(key.equals("ref"))
settings.put(ProjectProperty.REFERENCE, qta);
else if(key.equals("annotation"))
settings.put(ProjectProperty.ANNOTATION, qta);
else if(key.equals("bam") || key.equals("vcf") || key.equals("bcf"))
settings.put(ProjectProperty.NEXT_GEN_DATA, qta);
else if(key.equals("chado"))
settings.put(ProjectProperty.CHADO, qta);
}
props.add(Box.createVerticalGlue());
props.revalidate();
props.repaint();
listener.setSettings(settings);
}
} }
} }
}); });
panel.add(props, BorderLayout.CENTER); //
yBox.add(Box.createVerticalGlue());
yBox.revalidate();
yBox.repaint();
listener.setSettings(settings);
} }
/** /**
* Create a project hash of the properties. * Create a project hash of the properties.
* @param projectProps * @param projectProps
......
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