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Commit 8b1a8ed7 authored by tjc's avatar tjc
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git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3420 ee4ac58c-ac51-4696-9907-e4b3aa274f04
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uk/ac/sanger/artemis/components/FileManager.java deleted 100644 → 0
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− 435
View file @ 6808b7dc
/********************************************************************
*
* This library is free software; you can redistribute it and/or
* modify it under the terms of the GNU Library General Public
* License as published by the Free Software Foundation; either
* version 2 of the License, or (at your option) any later version.
*
* This library is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
* Library General Public License for more details.
*
* You should have received a copy of the GNU Library General Public
* License along with this library; if not, write to the
* Free Software Foundation, Inc., 59 Temple Place - Suite 330,
* Boston, MA 02111-1307, USA.
*
* Copyright (C) Genome Research Limited
*
********************************************************************/
package uk.ac.sanger.artemis.components;
import uk.ac.sanger.artemis.util.StringVector;
import uk.ac.sanger.artemis.Options;
import javax.swing.*;
import java.io.File;
import java.io.FileFilter;
import java.awt.event.*;
import java.awt.geom.*;
import java.awt.*;
public class FileManager extends JFrame
{
/** busy cursor */
private Cursor cbusy = new Cursor(Cursor.WAIT_CURSOR);
/** done cursor */
private Cursor cdone = new Cursor(Cursor.DEFAULT_CURSOR);
public FileManager(JFrame frame)
{
this(frame,getArtemisFilter());
}
/**
*
* File Manager Frame
* @param frame parent frame
*
*/
public FileManager(JFrame frame, FileFilter filter)
{
super("File Manager");
FileTree ftree = new FileTree(new File(System.getProperty("user.dir")),
frame, filter);
JScrollPane jsp = new JScrollPane(ftree);
JPanel pane = (JPanel)getContentPane();
pane.setLayout(new BorderLayout());
pane.add(jsp, BorderLayout.CENTER);
setJMenuBar(makeMenuBar(pane,ftree));
pane.add(getFileFileterComboBox(ftree), BorderLayout.SOUTH);
Dimension screen = Toolkit.getDefaultToolkit().getScreenSize();
jsp.setPreferredSize(new Dimension(210,
(int)(screen.getHeight()/2)));
pack();
int yloc = (int)((screen.getHeight()-getHeight())/2);
setLocation(0,yloc);
setVisible(true);
}
protected JComboBox getFileFileterComboBox(final FileTree ftree)
{
String[] filters = { "Artemis Files", "Sequence Files",
"Feature Files", "All Files" };
final JComboBox comboFilter = new JComboBox(filters);
comboFilter.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
{
String select = (String)comboFilter.getSelectedItem();
if(select.equals("Artemis Files"))
ftree.setFilter(getArtemisFilter());
else if(select.equals("Sequence Files"))
ftree.setFilter(getSequenceFilter());
else if(select.equals("Feature Files"))
ftree.setFilter(getFeatureFilter());
else if(select.equals("All Files"))
{
ftree.setFilter(new FileFilter()
{
public boolean accept(File pathname)
{
if(pathname.getName().startsWith("."))
return false;
return true;
}
});
}
}
});
return comboFilter;
}
/**
*
* Get a file filter for sequence and feature suffixes.
* @return file filter
*/
protected static FileFilter getArtemisFilter()
{
final StringVector sequence_suffixes =
Options.getOptions().getOptionValues("sequence_file_suffixes");
final StringVector feature_suffixes =
Options.getOptions().getOptionValues("feature_file_suffixes");
final FileFilter artemis_filter = new FileFilter()
{
public boolean accept(File pathname)
{
if(pathname.isDirectory() &&
!pathname.getName().startsWith("."))
return true;
for(int i = 0; i<sequence_suffixes.size(); ++i)
{
final String suffix = sequence_suffixes.elementAt(i);
if(pathname.getName().endsWith("." + suffix) ||
pathname.getName().endsWith("." + suffix + ".gz"))
return true;
}
for(int i = 0; i<feature_suffixes.size(); ++i)
{
final String suffix = feature_suffixes.elementAt(i);
if(pathname.getName().endsWith("." + suffix) ||
pathname.getName().endsWith("." + suffix + ".gz"))
return true;
}
return false;
}
};
return artemis_filter;
}
/**
*
* Get a file filter for feature suffixes.
* @return file filter
*/
protected static FileFilter getFeatureFilter()
{
final StringVector feature_suffixes =
Options.getOptions().getOptionValues("feature_file_suffixes");
final FileFilter feature_filter = new FileFilter()
{
public boolean accept(File pathname)
{
if(pathname.isDirectory() &&
!pathname.getName().startsWith("."))
return true;
for(int i = 0; i<feature_suffixes.size(); ++i)
{
final String suffix = feature_suffixes.elementAt(i);
if(pathname.getName().endsWith("." + suffix) ||
pathname.getName().endsWith("." + suffix + ".gz"))
return true;
}
return false;
}
};
return feature_filter;
}
/**
*
* Get a file filter for sequence suffixes.
* @return file filter
*/
protected static FileFilter getSequenceFilter()
{
final StringVector sequence_suffixes =
Options.getOptions().getOptionValues("sequence_file_suffixes");
final FileFilter seq_filter = new FileFilter()
{
public boolean accept(File pathname)
{
if(pathname.isDirectory() &&
!pathname.getName().startsWith("."))
return true;
for(int i = 0; i<sequence_suffixes.size(); ++i)
{
final String suffix = sequence_suffixes.elementAt(i);
if(pathname.getName().endsWith("." + suffix) ||
pathname.getName().endsWith("." + suffix + ".gz"))
return true;
}
return false;
}
};
return seq_filter;
}
/**
*
* Set up a menu and tool bar
* @param pane panel to add toolbar to
* @param ftree file tree display
*
*/
private JMenuBar makeMenuBar(JPanel pane, final FileTree ftree)
{
JMenuBar mBar = new JMenuBar();
JMenu fileMenu = new JMenu("File");
mBar.add(fileMenu);
JMenuItem fileMenuGoto = new JMenuItem("Go to Directory ...");
fileMenuGoto.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
{
String dir = ftree.getRoot().getAbsolutePath();
String newDir = JOptionPane.showInputDialog(FileManager.this,
"Go to Directory:",dir);
if(newDir == null)
return;
newDir = newDir.trim();
File newDirFile = new File(newDir);
if(newDirFile.exists() &&
newDirFile.canRead() &&
!newDir.equals(dir))
ftree.newRoot(newDir);
else
{
String error = null;
if(!newDirFile.exists())
error = new String(newDir+" doesn't exist!");
else if(!newDirFile.canRead())
error = new String(newDir+" cannot be read!");
else if(newDir.equals(dir))
error = new String("Same directory!");
if(error != null)
JOptionPane.showMessageDialog(FileManager.this,
error, "Warning",
JOptionPane.WARNING_MESSAGE);
}
}
});
fileMenu.add(fileMenuGoto);
fileMenu.add(new JSeparator());
JMenuItem fileMenuClose = new JMenuItem("Close");
fileMenuClose.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
{
setVisible(false);
}
});
fileMenu.add(fileMenuClose);
// tool bar set up
JToolBar toolBar = new JToolBar();
Dimension buttonSize = new Dimension(22,24);
JButton upBt = new JButton()
{
public void paintComponent(Graphics g)
{
super.paintComponent(g);
Graphics2D g2 = (Graphics2D)g;
g2.setColor(new Color(0,128,0));
float loc1[][] = { {11,18}, {7,18}, {7,14},
{3,14}, {11,4} };
g2.fill(makeShape(loc1));
g2.setColor(Color.green);
float loc2[][] = { {11,18}, {15,18}, {15,14},
{19,14}, {11,4} };
g2.fill(makeShape(loc2));
setSize(22,24);
}
};
upBt.setPreferredSize(buttonSize);
upBt.setMinimumSize(buttonSize);
upBt.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
{
FileManager.this.setCursor(cbusy);
File root = ftree.getRoot();
String parent = root.getParent();
if(parent != null)
ftree.newRoot(parent);
FileManager.this.setCursor(cdone);
}
});
toolBar.add(upBt);
// yeastpub
JButton shortCut1 = new JButton()
{
public void paintComponent(Graphics g)
{
super.paintComponent(g);
Graphics2D g2 = (Graphics2D)g;
Font font = new Font("Monospaced", Font.BOLD, 14);
g2.setFont(font);
g2.setColor(Color.black);
g2.drawString("Y",4,18);
g2.setColor(Color.red);
g2.drawString("P",10,15);
setSize(22,24);
}
};
shortCut1.setPreferredSize(buttonSize);
shortCut1.setMinimumSize(buttonSize);
shortCut1.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
{
ftree.newRoot("/nfs/disk222/yeastpub");
}
});
if((new File("/nfs/disk222/yeastpub")).exists())
toolBar.add(shortCut1);
// pathdata
JButton shortCut2 = new JButton()
{
public void paintComponent(Graphics g)
{
super.paintComponent(g);
Graphics2D g2 = (Graphics2D)g;
Font font = new Font("Monospaced", Font.BOLD, 14);
g2.setFont(font);
g2.setColor(Color.black);
g2.drawString("P",4,18);
g2.setColor(Color.red);
g2.drawString("D",10,15);
setSize(22,24);
}
};
shortCut2.setPreferredSize(buttonSize);
shortCut2.setMinimumSize(buttonSize);
shortCut2.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
{
ftree.newRoot("/nfs/pathdata/");
}
});
if((new File("/nfs/pathdata/")).exists())
toolBar.add(shortCut2);
// home button
JButton homeBt = new JButton()
{
public void paintComponent(Graphics g)
{
super.paintComponent(g);
Graphics2D g2 = (Graphics2D)g;
g2.setColor(Color.blue);
float loc1[][] = { {3,14}, {11,3}, {19,14},
{17,14}, {17,18}, {5,18}, {5,14} };
g2.fill(makeShape(loc1));
setSize(22,24);
}
};
homeBt.setPreferredSize(buttonSize);
homeBt.setMinimumSize(buttonSize);
homeBt.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
{
ftree.newRoot(System.getProperty("user.home"));
}
});
toolBar.add(homeBt);
toolBar.add(Box.createVerticalStrut(35));
pane.add(toolBar, BorderLayout.NORTH);
return mBar;
}
/**
*
* Used to draw a Shape.
*
*/
public static GeneralPath makeShape(float loc[][])
{
GeneralPath path = new GeneralPath(GeneralPath.WIND_NON_ZERO);
path.moveTo(loc[0][0],loc[0][1]);
for(int i=1; i<loc.length; i++)
path.lineTo(loc[i][0],loc[i][1]);
return path;
}
}
uk/ac/sanger/artemis/components/FileNode.java deleted 100644 → 0
+ 0
− 159
View file @ 6808b7dc
/********************************************************************
*
* This library is free software; you can redistribute it and/or
* modify it under the terms of the GNU Library General Public
* License as published by the Free Software Foundation; either
* version 2 of the License, or (at your option) any later version.
*
* This library is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
* Library General Public License for more details.
*
* You should have received a copy of the GNU Library General Public
* License along with this library; if not, write to the
* Free Software Foundation, Inc., 59 Temple Place - Suite 330,
* Boston, MA 02111-1307, USA.
*
* Copyright (C) Genome Research Limited
*
********************************************************************/
package uk.ac.sanger.artemis.components;
import java.awt.datatransfer.*;
import javax.swing.tree.*;
import java.io.*;
import java.util.*;
/**
*
* File node for local file tree manager
*
*/
public class FileNode extends DefaultMutableTreeNode
implements Transferable, Serializable
{
/** true if explored */
private boolean explored = false;
/** data flavour of a file node */
public static DataFlavor FILENODE =
new DataFlavor(FileNode.class, "Local file");
/** flavours file node and string */
static DataFlavor flavors[] = { FILENODE, DataFlavor.stringFlavor };
/**
*
* @param file file node file
*
*/
public FileNode(File file)
{
setUserObject(file);
}
/** Determine if this is a directory */
public boolean getAllowsChildren() { return isDirectory(); }
/** Determine if this is a file */
public boolean isLeaf() { return !isDirectory(); }
/** Get the File this node represents */
public File getFile() { return (File)getUserObject(); }
/** Determine if this node has been explored */
public boolean isExplored() { return explored; }
/** Determine if this is a directory */
public boolean isDirectory()
{
File file = getFile();
return file.isDirectory();
}
/**
*
* Returns the name of the file
*
*/
public String toString()
{
File file = (File)getUserObject();
String filename = file.toString();
int index = filename.lastIndexOf(File.separator);
return (index != -1 && index != filename.length()-1) ?
filename.substring(index+1) :
filename;
}
/**
*
* Explores a directory adding a FileNode for each
* child
*
*/
public void explore(FileFilter filter)
{
if(!isDirectory())
return;
if(!isExplored())
{
File file = getFile();
explored = true;
File[] children;
// filter files
children = file.listFiles(filter);
// sort into alphabetic order
java.util.Arrays.sort(children);
for(int i=0; i < children.length; ++i)
add(new FileNode(children[i]));
}
}
/**
*
* Forces the directory to be re-explored
*
*/
public void reExplore(FileFilter filter)
{
explored = false;
removeAllChildren();
explore(filter);
}
// Transferable
public DataFlavor[] getTransferDataFlavors()
{
return flavors;
}
public boolean isDataFlavorSupported(DataFlavor f)
{
if(f.equals(FILENODE) || f.equals(DataFlavor.stringFlavor))
return true;
return false;
}
public Object getTransferData(DataFlavor d)
throws UnsupportedFlavorException, IOException
{
if(d.equals(FILENODE))
return this;
else if(d.equals(DataFlavor.stringFlavor))
return getFile().getAbsolutePath();
else throw new UnsupportedFlavorException(d);
}
//Serializable
private void writeObject(java.io.ObjectOutputStream out) throws IOException
{
out.defaultWriteObject();
}
private void readObject(java.io.ObjectInputStream in)
throws IOException, ClassNotFoundException
{
in.defaultReadObject();
}
}
uk/ac/sanger/artemis/components/FileTree.java deleted 100644 → 0
+ 0
− 943
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