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Commit a3f1f86e authored by tcarver's avatar tcarver
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Merge pull request #194 from tcarver/master

fix for paired stack view when showing SNPs
parents 3efa75c9 f63e674b
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......@@ -1837,11 +1837,15 @@ public class BamView extends JPanel
else
g2.setColor(Color.blue);
Color c = g2.getColor();
drawRead(g2, pr.sam1, pixPerBase, ypos, baseAtStartOfView, getSNPs(pr.sam1.sam), ydiff);
if(pr.sam2 != null)
{
g2.setColor(c);
drawRead(g2, pr.sam2, pixPerBase, ypos, baseAtStartOfView, getSNPs(pr.sam2.sam), ydiff);
}
}
}
/**
* Check if a record is on the negative strand. If the RNA strand specific
......
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