add logfile appender

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@6377 ee4ac58c-ac51-4696-9907-e4b3aa274f04

etc/log4j.properties

+!-----------------------------------------------------------------------------!
+! Configure categories (loggers)                                              !
+!-----------------------------------------------------------------------------!
+
 #log4j.rootLogger=debug, R
 log4j.rootLogger=R
 
-log4j.appender.stdout=org.apache.log4j.ConsoleAppender
-log4j.appender.stdout.layout=org.apache.log4j.PatternLayout
-
-# SqlMap logging configuration...
 
 log4j.logger.com.ibatis=DEBUG, R
 log4j.logger.uk.ac.sanger.artemis.components.Splash=DEBUG, R
-#log4j.logger.uk.ac.sanger.artemis.j2ssh.SshPSUClient=DEBUG, R
-#log4j.logger.uk.ac.sanger.artemis.ExternalProgram=DEBUG, R
+log4j.logger.uk.ac.sanger.artemis.j2ssh.SshPSUClient=DEBUG, R
+log4j.logger.uk.ac.sanger.artemis.ExternalProgram=DEBUG, R
 log4j.logger.uk.ac.sanger.artemis.chado.ChadoTransactionManager=DEBUG, R
 log4j.logger.uk.ac.sanger.artemis.chado.Similarity=DEBUG, R
+log4j.logger.uk.ac.sanger.artemis.chado.IBatisDAO=DEBUG, R
 log4j.logger.uk.ac.sanger.artemis.chado.SqlMapClientWrapper=DEBUG, R
 log4j.logger.uk.ac.sanger.artemis.util.DatabaseDocument=DEBUG, R
 log4j.logger.uk.ac.sanger.artemis.editor.FastaTextPane=DEBUG, R
@@ -31,16 +32,28 @@ log4j.logger.java.sql.PreparedStatement=DEBUG, R
 # j2ssh
 log4j.logger.com.sshtools.j2ssh=WARN, R
 # Pattern to output the caller's file name and line number.
-log4j.appender.stdout.layout.ConversionPattern=%5p [%t] (%F:%L) - %m%n
+
+!-----------------------------------------------------------------------------!
+! Configure appenders (log destinations/targets) and their options            !
+!-----------------------------------------------------------------------------!
+
+log4j.appender.stdout=org.apache.log4j.ConsoleAppender
+log4j.appender.stdout.layout=org.apache.log4j.PatternLayout
+log4j.appender.stdout.layout.ConversionPattern=%5p [%t] (%F:%L) - %m% n
 
 log4j.appender.Default=uk.ac.sanger.artemis.components.LogViewer
-# Rolling appender
-#log4j.appender.R=org.apache.log4j.RollingFileAppender
 log4j.appender.R=uk.ac.sanger.artemis.components.LogViewer
 log4j.appender.R.MaxLogLines=1000
-#log4j.appender.R.File=artemis.log
-#log4j.appender.R.MaxFileSize=100KB
 log4j.appender.R.layout=org.apache.log4j.PatternLayout
 log4j.appender.R.layout.ConversionPattern=%5p [%t] %c - %m%n
 
+!-------------------------RollingFileAppender OPTIONS-------------------------!
+log4j.appender.LOGFILE=org.apache.log4j.DailyRollingFileAppender
+log4j.appender.LOGFILE.File=ibatis.log
+log4j.appender.LOGFILE.Append=true
+log4j.appender.LOGFILE.DatePattern='.'yyyy-ww:
+#log4j.appender.LOGFILE.Threshold=INFO
+log4j.appender.LOGFILE.layout=org.apache.log4j.PatternLayout
+log4j.appender.LOGFILE.layout.ConversionPattern=%d{dd MMM yyyy HH:mm:ss,SSS} %-4r [%t] %-5p %c %x - %m%n
+