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Commit ab987450 authored by tjc's avatar tjc
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use srcfeature_id when updating and add getFeatureLocBySrcFeatureId

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@11508 ee4ac58c-ac51-4696-9907-e4b3aa274f04
parent 66e4aa0f
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......@@ -7,8 +7,6 @@
<sqlMap namespace="FeatureLoc">
<typeAlias alias="FeatureLoc"
type="org.gmod.schema.sequence.FeatureLoc"/>
......@@ -37,13 +35,19 @@
WHERE featureloc.feature_id=#id#
</select>
<select id="getFeatureLocBySrcFeatureId" resultMap="map-location-lazy">
SELECT feature_id, srcfeature_id, fmin, fmax, strand, phase, residue_info, locgroup, rank, is_fmin_partial, is_fmax_partial
FROM featureloc
WHERE srcfeature_id=#id#
</select>
<select id="getFeatureLocsByListOfIds" resultMap ="map-location-lazy">
SELECT feature_id, srcfeature_id, fmin, fmax, strand, phase, residue_info, locgroup, rank, is_fmin_partial, is_fmax_partial
FROM featureloc
WHERE featureloc.feature_id IN <iterate open="(" close=")" conjunction=","> $[]$ </iterate>
</select>
<!-- used to find match meature from the subject and query featureId -->
<!-- used to find match feature from the subject and query featureId -->
<select id="getFeatureIdBySrcFeatureId" parameterClass="Feature" resultClass="java.lang.Integer">
<iterate property="featureLocsForFeatureId" conjunction="INTERSECT" >
SELECT feature_id FROM featureloc WHERE srcfeature_id=#featureLocsForFeatureId[].featureBySrcFeatureId.featureId#
......@@ -56,7 +60,7 @@
<update id="updateFeatureLoc"
parameterClass="FeatureLoc">
UPDATE featureloc
SET fmin=$fmin$, fmax=$fmax$, rank=$rank$, strand=$strand$,
SET fmin=$fmin$, fmax=$fmax$, strand=$strand$,
is_fmin_partial=#fminPartial#,
is_fmax_partial=#fmaxPartial#
<isNotNull property="phase">
......@@ -74,6 +78,9 @@
feature_id=(SELECT feature_id FROM feature WHERE uniquename=#featureByFeatureId.uniqueName#)
</isNotNull>
</isLessEqual>
<isGreaterThan property="featureBySrcFeatureId.featureId" compareValue="0" prepend="AND">
srcfeature_id=$featureBySrcFeatureId.featureId$
</isGreaterThan>
</update>
<update id="updateFeatureLocByChangingSequence"
......
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