add check for intron GT/GT start and AG end
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4295 ee4ac58c-ac51-4696-9907-e4b3aa274f04
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git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4295 ee4ac58c-ac51-4696-9907-e4b3aa274f04