add getDatabaseQualifiersToRemove()

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@14554 ee4ac58c-ac51-4696-9907-e4b3aa274f04

uk/ac/sanger/artemis/io/PublicDBDocumentEntry.java

@@ -373,7 +373,6 @@ public class PublicDBDocumentEntry extends SimpleDocumentEntry
                                  final QualifierVector newQualifiers,
                                  final boolean isGene)
   {
-    Qualifier qualifier;
     for(int i=0; i<newQualifiers.size(); i++)
     {
       Qualifier newQualifier = (Qualifier) newQualifiers.get(i);
@@ -512,7 +511,7 @@ public class PublicDBDocumentEntry extends SimpleDocumentEntry
     if(ntranscripts > 1)
     {
       addNewQualifier(qualifiers, transcriptQualifiers.getQualifierByName("ID"));
-      List transcripts = chadoGene.getTranscripts();
+      List<Feature> transcripts = chadoGene.getTranscripts();
       for(int i=0;i<ntranscripts;i++)
       {
         Feature thisTranscript = (Feature)transcripts.get(i);
@@ -638,6 +637,12 @@ public class PublicDBDocumentEntry extends SimpleDocumentEntry
       return new GenbankStreamSequence (sequence);
   }
   
+  public static Object[] getDatabaseQualifiersToRemove()  
+  {
+    initDatabaseMappings();
+    return DATABASE_QUALIFIERS_TO_REMOVE;
+  }
+  
   /**
    *  Read key and qualifier mappings for CHADO to EMBL
    **/