hide protein feature

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@6369 ee4ac58c-ac51-4696-9907-e4b3aa274f04

uk/ac/sanger/artemis/io/GFFDocumentEntry.java

@@ -20,7 +20,7 @@
  * along with this program; if not, write to the Free Software
  * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
  *
- * $Header: //tmp/pathsoft/artemis/uk/ac/sanger/artemis/io/GFFDocumentEntry.java,v 1.47 2007-09-07 14:10:40 tjc Exp $
+ * $Header: //tmp/pathsoft/artemis/uk/ac/sanger/artemis/io/GFFDocumentEntry.java,v 1.48 2007-09-11 11:00:37 tjc Exp $
  */
 
 package uk.ac.sanger.artemis.io;
@@ -42,7 +42,7 @@ import java.sql.Timestamp;
  *  A DocumentEntry that can read an GFF entry from a Document.
  *
  *  @author Kim Rutherford
- *  @version $Id: GFFDocumentEntry.java,v 1.47 2007-09-07 14:10:40 tjc Exp $
+ *  @version $Id: GFFDocumentEntry.java,v 1.48 2007-09-11 11:00:37 tjc Exp $
  **/
 
 public class GFFDocumentEntry extends SimpleDocumentEntry
@@ -237,7 +237,10 @@ public class GFFDocumentEntry extends SimpleDocumentEntry
             ChadoCanonicalGene gene = (ChadoCanonicalGene)transcripts_lookup.get(parent);
              
             if(parent_qualifier == null)
+            {
+              ((GFFStreamFeature)this_feature).setVisible(false);
               gene.addProtein(parent, this_feature);
+            }
             else if(key.equals("three_prime_UTR"))
               gene.add3PrimeUtr(parent, this_feature);
             else if(key.equals("five_prime_UTR"))