add to classpath

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4798 ee4ac58c-ac51-4696-9907-e4b3aa274f04

Makefile

 # This is a GNU Makefile for Artemis
 
-# $Header: //tmp/pathsoft/artemis/Makefile,v 1.22 2006-09-05 12:34:41 tjc Exp $
+# $Header: //tmp/pathsoft/artemis/Makefile,v 1.23 2006-09-28 15:39:51 tjc Exp $
 
 SHELL=/bin/sh
 
@@ -8,7 +8,7 @@ SHELL=/bin/sh
 
 JAVAC := javac -source 1.3 -target 1.3 $(OPT_FLAGS) $(EXTRA_FLAGS)
 
-REAL_CLASSPATH := CLASSPATH=lib/biojava.jar:lib/jobcontrol.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-common-2.jar:lib/ibatis/ibatis-sqlmap-2.jar:.
+REAL_CLASSPATH := CLASSPATH=lib/biojava.jar:lib/jobcontrol.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-common-2.jar:lib/ibatis/ibatis-sqlmap-2.jar:lib/chado-14-interface.jar:.
 
 NAMES:= \
 	uk/ac/sanger/artemis/OptionChangeListener \
@@ -201,10 +201,8 @@ NAMES:= \
 	uk/ac/sanger/artemis/io/QualifierInfo \
 	uk/ac/sanger/artemis/io/QualifierInfoVector \
 	uk/ac/sanger/artemis/io/QualifierInfoHash \
-	uk/ac/sanger/artemis/chado/CvTerm \
 	uk/ac/sanger/artemis/chado/DbSqlConfig \
-	uk/ac/sanger/artemis/chado/Feature \
-	uk/ac/sanger/artemis/chado/Organism \
+	uk/ac/sanger/artemis/chado/Feature
 
 CLASSES := $(NAMES:%=%.class)
 SOURCES := $(NAMES:%=%.java)

art

@@ -6,7 +6,7 @@
 # necessary a symbolic link can be made to this script from
 # /usr/local/bin/ or elsewhere.
 
-# $Header: //tmp/pathsoft/artemis/art,v 1.16 2006-02-16 14:13:43 tjc Exp $
+# $Header: //tmp/pathsoft/artemis/art,v 1.17 2006-09-28 15:38:42 tjc Exp $
 
 # resolve links - $0 may be a link
 PRG=$0
@@ -28,7 +28,7 @@ done
 ARTEMIS_HOME=`dirname "$PRG"`/.
 LIBDIR=/nfs/pathsoft/prod/javalibs
 
-CLASSPATH=$ARTEMIS_HOME:$ARTEMIS_HOME/lib/biojava.jar:$ARTEMIS_HOME/lib/jemAlign.jar:$ARTEMIS_HOME/lib/jakarta-regexp-1.2.jar:$ARTEMIS_HOME/lib/macos.jar:$ARTEMIS_HOME/lib/postgresql-8.0-310.jdbc2ee.jar:$CLASSPATH
+CLASSPATH=$ARTEMIS_HOME:$ARTEMIS_HOME/lib/biojava.jar:$ARTEMIS_HOME/lib/jemAlign.jar:$ARTEMIS_HOME/lib/jakarta-regexp-1.2.jar:$ARTEMIS_HOME/lib/macos.jar:$ARTEMIS_HOME/lib/postgresql-8.1-407.jdbc2ee.jar:lib/chado-14-interface.jar:$CLASSPATH
 
 # j2ssh jars
 CLASSPATH=$CLASSPATH:$ARTEMIS_HOME/lib/j2ssh/commons-logging.jar:$ARTEMIS_HOME/lib/j2ssh/j2ssh-core.jar:$ARTEMIS_HOME/lib/j2ssh/