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Commit f070197d authored by tcarver's avatar tcarver
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warn when overlaying a GFF with a sequence onto a sequence entry

parent 17b7d055
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......@@ -26,6 +26,7 @@
package uk.ac.sanger.artemis;
import uk.ac.sanger.artemis.sequence.*;
import uk.ac.sanger.artemis.components.MessageDialog;
import uk.ac.sanger.artemis.io.GFFDocumentEntry;
import uk.ac.sanger.artemis.io.IndexedGFFDocumentEntry;
import uk.ac.sanger.artemis.io.Range;
......@@ -646,7 +647,16 @@ public class SimpleEntryGroup extends EntryVector
if(entry.getEMBLEntry() instanceof IndexedGFFDocumentEntry)
((IndexedGFFDocumentEntry)entry.getEMBLEntry()).setEntryGroup(this);
else if(entry.getEMBLEntry() instanceof GFFDocumentEntry)
{
((GFFDocumentEntry)entry.getEMBLEntry()).adjustCoordinates( getSequenceEntry() );
if(!Options.isBlackBeltMode() && size() > 1 &&
entry.getEMBLEntry().getSequence() != null )
{
new MessageDialog (null, "Warning",
"Overlaying a GFF with a sequence onto an entry with a sequence.",
false);
}
}
addElement(entry);
}
......
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