updates

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@6197 ee4ac58c-ac51-4696-9907-e4b3aa274f04

etc/feature_keys_gff

@@ -5,18 +5,18 @@
 #
 # key               Qualifiers (@=mandatory)
 # =======           ========================
-region              ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified description locus stable_id ec_number gene_symbol Ontology_term dbxref molecule_type size organism_name strain translation_table topology localization gff_source gff_seqname score 
-contig              ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified description locus stable_id ec_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain translation_table topology localization gff_source gff_seqname score 
-supercontig         ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified description locus stable_id ec_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain translation_table topology localization gff_source gff_seqname score 
-chromosome          ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified note description locus stable_id ec_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain translation_table topology localization gff_source gff_seqname score 
-gene                ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified locus stable_id ec_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain translation_table topology localization gff_source gff_seqname score 
-CDS                 ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified codon_start description locus stable_id ec_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain translation_table topology localization gff_source gff_seqname score  results note job
-polypeptide         ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified description locus stable_id ec_number gene_symbol Ontology_term Dbxref product molecule_type size organism_name strain translation_table topology localization gff_source gff_seqname score  mass isoelectric charge source
-pseudogene          ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified description locus stable_id ec_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain translation_table topology localization gff_source gff_seqname score 
-pseudogenic_exon    ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified description locus stable_id ec_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain translation_table topology localization gff_source gff_seqname score
-pseudogenic_transcript ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified description locus stable_id ec_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain translation_table topology localization gff_source gff_seqname score 
-intron              ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified description locus stable_id ec_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain translation_table topology localization gff_source gff_seqname score 
-exon                ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified codon_start description locus stable_id ec_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain translation_table topology localization gff_source gff_seqname score 
+region              ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified description locus stable_id ec_number gene_symbol Ontology_term dbxref molecule_type size organism_name strain topology localization gff_source gff_seqname score 
+contig              ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified description locus stable_id ec_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain topology localization gff_source gff_seqname score 
+supercontig         ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified description locus stable_id ec_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain topology localization gff_source gff_seqname score 
+chromosome          ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified note description locus stable_id ec_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain topology localization gff_source gff_seqname score 
+gene                ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified locus stable_id ec_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain topology localization gff_source gff_seqname score 
+CDS                 ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified codon_start description locus stable_id ec_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain topology localization gff_source gff_seqname score  results note job
+polypeptide         ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified description locus stable_id ec_number gene_symbol Ontology_term Dbxref product molecule_type size organism_name strain topology localization gff_source gff_seqname score mass isoelectric charge source GO similarity controlled_curation
+pseudogene          ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified description locus stable_id ec_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain topology localization gff_source gff_seqname score 
+pseudogenic_exon    ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified description locus stable_id ec_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain topology localization gff_source gff_seqname score
+pseudogenic_transcript ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified description locus stable_id ec_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain topology localization gff_source gff_seqname score 
+intron              ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified description locus stable_id ec_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain topology localization gff_source gff_seqname score 
+exon                ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified codon_start description locus stable_id ec_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain topology localization gff_source gff_seqname score 
 three_prime_UTR     ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified systematic_id db_xref note 
 five_prime_UTR      ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified systematic_id db_xref note 
 transcript          ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified 
@@ -41,60 +41,37 @@ repeat_family       ID Name Alias Parent Note Target Gap Derives_from Dbxref Ont
 transposable_element  ID Name Alias Parent Target Gap Derives_from Note Dbxref Ontology_term feature_id timelastmodified
 binding_site        ID Name Alias Parent Target Gap Derives_from Note Dbxref Ontology_term feature_id timelastmodified
 
--               ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified EC_number PCR_conditions allele anticodon bound_moiety cell_line cell_type chromosome citation clone clone_lib codon codon_start cons_splice country cultivar db_xref dev_stage direction ecotype environmental_sa evidence exception focus frequency function gene germline haplotype insertion_seq isolate isolation_source lab_host label locus_tag macronuclear map mod_base mol_type note number organelle organism partial phenotype plasmid pop_variant product protein_id proviral pseudo rearranged replace rpt_family rpt_type rpt_unit segment sequenced_mol serotype serovar sex specific_host specimen_voucher standard_name strain sub_clone sub_species sub_strain tissue_lib tissue_type transgenic transl_except transl_table translation transposon usedin variety virion
--10_signal      ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note operon partial standard_name usedin
--35_signal      ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note operon partial standard_name usedin
-3'UTR           ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note partial standard_name usedin
-3'clip          ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note partial standard_name usedin
-5'UTR           ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note partial standard_name usedin
-5'clip          ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note partial standard_name usedin
-CAAT_signal     ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence gene label locus_tag map note partial usedin
-C_region        ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation codon codon_start db_xref evidence gene label locus_tag map note partial product pseudo standard_name transl_except translation usedin
-D-loop          ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence gene label locus_tag map note partial usedin
-D_segment       ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation codon codon_start db_xref evidence gene label locus_tag map note partial product pseudo standard_name transl_except translation usedin
-GC_signal       ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence gene label locus_tag map note partial usedin
-J_segment       ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation codon codon_start db_xref evidence gene label locus_tag map note partial product pseudo standard_name transl_except translation usedin
-LTR             ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note partial standard_name usedin
-N_region        ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation codon codon_start db_xref evidence gene label locus_tag map note partial product pseudo standard_name transl_except translation usedin
-RBS             ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence gene label locus_tag map note partial standard_name usedin
-STS             ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence gene label locus_tag map note partial standard_name usedin
-S_region        ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation codon codon_start db_xref evidence gene label locus_tag map note partial product pseudo standard_name transl_except translation usedin
-TATA_signal     ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence gene label locus_tag map note partial usedin
-V_region        ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation codon codon_start db_xref evidence gene label locus_tag map note partial product pseudo standard_name transl_except translation usedin
-V_segment       ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation codon codon_start db_xref evidence gene label locus_tag map note partial product pseudo standard_name transl_except translation usedin
-attenuator      ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence gene label locus_tag map note operon partial phenotype usedin
-conflict        ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified @citation allele db_xref evidence gene label locus_tag map note replace usedin
-enhancer        ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence gene label locus_tag map note partial standard_name usedin
-gap             ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified @estimated_length
-iDNA            ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note number partial standard_name usedin
-mat_peptide     ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified EC_number allele citation codon codon_start db_xref evidence function gene label locus_tag map note partial product pseudo standard_name transl_except usedin
-misc_RNA        ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note operon partial product standard_name usedin
-misc_binding    ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified @bound_moiety allele citation db_xref evidence function gene label locus_tag map note partial usedin
-misc_difference ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation clone db_xref evidence gene label locus_tag map note partial phenotype replace standard_name usedin
-misc_feature    ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note number partial phenotype product pseudo standard_name usedin
-misc_recomb     ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence gene label locus_tag map note organism partial standard_name usedin
-misc_signal     ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note operon partial phenotype standard_name usedin
-misc_structure  ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note partial standard_name usedin
-modified_base   ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified @mod_base allele citation db_xref evidence frequency gene label locus_tag map note usedin
-old_sequence    ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified @citation allele db_xref evidence gene label locus_tag map note partial replace usedin
-operon          ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified @operon allele citation db_xref evidence function label map note phenotype pseudo standard_name usedin
-oriT            ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele bound_moiety citation db_xref direction evidence gene label locus_tag map note rpt_family rpt_type rpt_unit standard_name usedin
-polyA_signal    ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence gene label locus_tag map note partial usedin
-polyA_site      ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence gene label locus_tag map note usedin
-precursor_RNA   ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note operon partial product standard_name usedin
-prim_transcript ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note operon partial standard_name usedin
-primer_bind     ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified PCR_conditions allele citation db_xref evidence gene label locus_tag map note partial standard_name usedin
-promoter        ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note operon partial phenotype pseudo standard_name usedin
-protein_bind    ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified @bound_moiety allele citation db_xref evidence function gene label locus_tag map note partial standard_name usedin
-rep_origin      ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref direction evidence gene label locus_tag map note partial standard_name usedin
-repeat_region   ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene insertion_seq label locus_tag map note partial rpt_family rpt_type rpt_unit standard_name transposon usedin
-repeat_unit     ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note partial rpt_family rpt_type rpt_unit usedin
-satellite       ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence gene label locus_tag map note partial rpt_family rpt_type rpt_unit standard_name usedin
-sig_peptide     ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation codon codon_start db_xref evidence function gene label locus_tag map note partial product pseudo standard_name transl_except usedin
-source          ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified @organism cell_line cell_type chloroplast chromoplast chromosome citation clone clone_lib country cultivar cyanelle db_xref dev_stage ecotype environmental_sample evidence focus frequency germline haplotype insertion_seq isolate isolation_source kinetoplast lab_host label macronuclear map mitochondrion mol_type note organelle plasmid pop_variant proviral rearranged segment sequenced_mol serotype serovar sex specific_host specimen_voucher strain sub_clone sub_species sub_strain tissue_lib tissue_type transgenic transposon usedin variety virion
-stem_loop       ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note operon partial standard_name usedin
-terminator      ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence gene label locus_tag map note operon partial standard_name usedin
-transit_peptide ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation codon codon_start db_xref evidence function gene label locus_tag map note partial product pseudo standard_name transl_except usedin
-unsure          ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence gene label locus_tag map note replace usedin
-variation       ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence frequency gene label locus_tag map note partial phenotype product replace standard_name usedin
- 
+minus_10_signal     ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note operon partial standard_name 
+minus_35_signal     ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note operon partial standard_name 
+three_prime_clip    ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note partial standard_name 
+five_prime_clip     ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note partial standard_name 
+CAAT_signal         ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence gene label locus_tag map note partial 
+D_loop              ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence gene label locus_tag map note partial 
+GC_signal           ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence gene label locus_tag map note partial 
+three_prime_LTR     ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note partial standard_name 
+five_prime_LTR      ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note partial standard_name 
+N_region        	ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation codon codon_start db_xref evidence gene label locus_tag map note partial product pseudo standard_name 
+STS             	ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence gene label locus_tag map note partial standard_name 
+TATA_box        	ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence gene label locus_tag map note partial 
+attenuator      	ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence gene label locus_tag map note operon partial phenotype 
+enhancer        	ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence gene label locus_tag map note partial standard_name 
+gap             	ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified @estimated_length
+iDNA            	ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note number partial standard_name 
+mature_peptide  	ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified EC_number allele citation codon codon_start db_xref evidence function gene label locus_tag map note partial product pseudo standard_name 
+modified_base_site  ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified @mod_base allele citation db_xref evidence frequency gene label locus_tag map note 
+operon          	ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified @operon allele citation db_xref evidence function label map note phenotype pseudo standard_name 
+polyA_signal_sequence  	ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence gene label locus_tag map note partial 
+polyA_site      		ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence gene label locus_tag map note 
+precursor_RNA   		ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note operon partial product standard_name 
+primary_transcript 		ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note operon partial standard_name 
+primer_binding_site     ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified PCR_conditions allele citation db_xref evidence gene label locus_tag map note partial standard_name 
+promoter        		ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note operon partial phenotype pseudo standard_name 
+protein_binding_site    ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified @bound_moiety allele citation db_xref evidence function gene label locus_tag map note partial standard_name 
+origin_of_replication	ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref direction evidence gene label locus_tag map note partial standard_name 
+repeat_region   	ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene insertion_seq label locus_tag map note partial rpt_family rpt_type rpt_unit standard_name DNA_transposon 
+repeat_unit     	ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note partial rpt_family rpt_type rpt_unit 
+satellite_DNA       ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence gene label locus_tag map note partial rpt_family rpt_type rpt_unit standard_name 
+stem_loop       	ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence function gene label locus_tag map note operon partial standard_name 
+terminator      	ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation db_xref evidence gene label locus_tag map note operon partial standard_name 
+transit_peptide 	ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified allele citation codon codon_start db_xref evidence function gene label locus_tag map note partial product pseudo standard_name
+

etc/qualifier_types_gff

@@ -43,7 +43,7 @@ mass             no         text
 isoelectric      no         text
 charge           no         text
 source           no         text
-go               no         text
+GO               no         text
 ortholog         no         "text"
 similarity       no         "text"
 partial          no         "text"
@@ -130,9 +130,4 @@ tissue_lib       no         "text"
 tissue_type      no         "text"
 transgenic       no         "text"
 translation      no         "text"
-transl_except    no         (::)    pos aa
-transl_table     no         number  1 11
-transposon       no         "text"
-usedin           no         feature
-variety          no         "text"
-virion           no         none
\ No newline at end of file
+DNA_transposon   no         "text"
\ No newline at end of file