Commits · 0acc33645d2428b7d55418c587be941c67b13ac7 · violethaze74 / Artemis

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Oct 14, 2009
- fix to show reads with large inferred size · c493379f
  tjc authored 15 years ago
  c493379f
- provide an option to asynchronous display · 78a4818e
  tjc authored 15 years ago
  78a4818e
Oct 13, 2009
- optimisations to speed up and fixes to accessing the readsInView list · 7b0a2c98
  tjc authored 15 years ago
  7b0a2c98
- make the BamView in Artemis asynchronous · 0ff0a9b6
  tjc authored 15 years ago
  0ff0a9b6
Oct 12, 2009
- some optimisations to speed up paintComponent · 0b257d8a
  tjc authored 15 years ago
  0b257d8a
- changes to memory monitoring · 201a68f9
  tjc authored 15 years ago
  201a68f9
Oct 09, 2009
- changes to help monitor the memory usage when reading and display bam files · 27f42b97
  tjc authored 15 years ago
  27f42b97
Oct 08, 2009
- fix for concatenating sequences · 8db03da3
  tjc authored 15 years ago
  8db03da3
Oct 06, 2009
- add menu separtors · f62ec095
  tjc authored 15 years ago
  f62ec095
- add strand stack view · a0d4bbeb
  tjc authored 15 years ago
  a0d4bbeb
- fixes for changing window size and adjust how reads can be selected · a6e8a6e2
  tjc authored 15 years ago
  a6e8a6e2
Oct 05, 2009
- all BamView reads to be clickable and provide an option to go to a read pair mate · 2d2ea225
  tjc authored 15 years ago
  2d2ea225
- remove scrollable interface · 53390539
  tjc authored 15 years ago
  53390539
Oct 03, 2009
- fix mouse selection in base alignment view · c6a3547a
  tjc authored 15 years ago
  c6a3547a
- rename JamView and fix zooming-in when running bam viewer outside artemis interface · 99d23276
  tjc authored 15 years ago
  99d23276
- change to using a JScrollBar · dd058f3e
  tjc authored 15 years ago
  dd058f3e
Oct 01, 2009
- fix so that the popup menu does not trigger a mouse click in such a way that it selects a new base · 0d3e84a5
  tjc authored 15 years ago
  0d3e84a5
- fix for clicking on bases · df6b8209
  tjc authored 15 years ago
  df6b8209
Sep 30, 2009
- changes to allow ranges to be selected with mouse drag · a154e1f4
  tjc authored 15 years ago
  a154e1f4
- add tooltips when mouseOver the reads · 0ae1a87b
  tjc authored 15 years ago
  0ae1a87b
Sep 29, 2009
- connect reads with translucent lines and add a paired stack view · 736d5669
  tjc authored 15 years ago
  736d5669
Sep 25, 2009
- add a coverage plot to the read alignment · 3e425945
  tjc authored 15 years ago
  3e425945
Sep 24, 2009
- use popup menu · 918d46e2
  tjc authored 15 years ago
  918d46e2
Sep 23, 2009
- fix for base view · 97482fcc
  tjc authored 15 years ago
  97482fcc
- colour reads in stack view based on if they are unique and if the have a mapped paired read · 374f5eb5
  tjc authored 15 years ago
  374f5eb5
- provide an alternative stack view of the reads · 68f45074
  tjc authored 15 years ago
  68f45074
- fix for zoom in Artemis at the sequence end · 9af05a51
  tjc authored 15 years ago
  9af05a51
- draw SNPs on reads · 6232a285
  tjc authored 15 years ago
  6232a285
- fix for drawing a read when its mate is not in the view · 828883d1
  tjc authored 15 years ago
  828883d1
Sep 22, 2009
- fixes for display the end of the read alignment in Artemis · 4c0e3e9e
  tjc authored 15 years ago
  4c0e3e9e
- update · bd7d9489
  tjc authored 15 years ago
  bd7d9489
Sep 21, 2009
- repaint after adjusting scale · 920fae92
  tjc authored 15 years ago
  920fae92
- revalidate when zooming in · 0625b19a
  tjc authored 15 years ago
  0625b19a
Sep 19, 2009
- fixes to zooming · 1c693e2e
  tjc authored 15 years ago
  1c693e2e
Sep 17, 2009
- auto hide buttons and further updates · 511c30a7
  tjc authored 15 years ago
  511c30a7
Sep 16, 2009
- changes to assist integration into Artemis · 92438cba
  tjc authored 15 years ago
  92438cba
Sep 04, 2009
- zoom buttons · 28777b05
  tjc authored 15 years ago
  28777b05
- use AlignmentBlocks to the sequence and to display SNPs · 0519b98c
  tjc authored 15 years ago
  0519b98c
- updates · 70900f3c
  tjc authored 15 years ago
  70900f3c
Sep 03, 2009
- changes to use Picard · 501fc6e3
  tjc authored 15 years ago
  501fc6e3

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Commits · 0acc33645d2428b7d55418c587be941c67b13ac7