Commits · 1d9be92680876f8d8b1df5d08cf496d855283a0c · violethaze74 / Artemis

Jan 29, 2014
- make mapped character list public · ff75a69d
  Sascha Steinbiss authored 11 years ago
  
  ff75a69d
- rework GFF3 export code · e4b54525
  Sascha Steinbiss authored 11 years ago
  
  e4b54525
Jan 24, 2014
- add option to define a cut-off · 5f9aef28
  tcarver authored 11 years ago
  
  5f9aef28
- use new drawMax() for coverage plot · de7b3227
  tcarver authored 11 years ago
  
  de7b3227
- add drawMax(Graphics2D g2, float max) · ac54e62b
  tcarver authored 11 years ago
  
  ac54e62b
Jan 20, 2014
- add comment to protein when splitting gene models · 67c34aa9
  tcarver authored 11 years ago
  
  67c34aa9
Jan 17, 2014
- add comment to the gene when splitting to note the previous ID · 682aff02
  tcarver authored 11 years ago
  
  682aff02
Jan 14, 2014
- introduce separate log scale option for coverage plots · d0bc6843
  tcarver authored 11 years ago
  
  d0bc6843
- allow to exclude attributes from GFF3 output · 0179a734
  Sascha Steinbiss authored 11 years ago
  
  0179a734
Jan 13, 2014
- GFF: do not output empty attributes · 92ee6275
  Sascha Steinbiss authored 11 years ago
  
  92ee6275
Jan 10, 2014
- GTF fixes · 4b88f099
  tcarver authored 11 years ago
  
  4b88f099
Jan 06, 2014
- specify CV feature_property when looking up cvterm for feature prop · b79a6f02
  tcarver authored 11 years ago
  
  b79a6f02
Dec 13, 2013
- changed for read count and rpkm to take into account strand specific tag · f1285f33
  tcarver authored 11 years ago
  
  f1285f33
Dec 05, 2013
- update to 2014 · deec3129
  tcarver authored 11 years ago
  
  deec3129
Nov 27, 2013
- warn when overlaying a GFF with a sequence onto a sequence entry · f070197d
  tcarver authored 11 years ago
  
  f070197d
- call processJnlpAttributes() · a4cb0ea0
  tcarver authored 11 years ago
  
  a4cb0ea0
- move processJnlpAttributes() to Splash · 1b1ce8be
  tcarver authored 11 years ago
  
  1b1ce8be
- move processJnlpAttributes() to Splash · 8a9f5ba5
  tcarver authored 11 years ago
  
  8a9f5ba5
Nov 26, 2013
- add CONTIG to genbank_hash · a93fd383
  tcarver authored 11 years ago
  
  a93fd383
Nov 21, 2013
- add selectContainedFeatures() · c2b1ad25
  tcarver authored 11 years ago
  
  c2b1ad25
Nov 20, 2013
- update GFF segment range store · 24264a18
  tcarver authored 11 years ago
  
  24264a18
Nov 15, 2013
- catch exception · 963c610a
  tcarver authored 11 years ago
  
  963c610a
- call GFFUtils.updateSegmentRangeStore() for GFF features on feature · 2b0a50fc
  tcarver authored 11 years ago
  
  location change
  2b0a50fc
- move isSelenocysteine() to GFFUtils · ebc524a2
  tcarver authored 11 years ago
  
  ebc524a2
- use GFFUtils.isSelenocysteine() · e14b74bb
  tcarver authored 11 years ago
  
  e14b74bb
- gff utilities · ca45a770
  tcarver authored 11 years ago
  
  ca45a770
- remove unused option and fix embl submission option · 59ed6b28
  tcarver authored 11 years ago
  
  59ed6b28
Nov 12, 2013
- fix for copying between entries and fix for showing features when · 7c3b5b5a
  tcarver authored 11 years ago
  
  concatenating the contigs
  7c3b5b5a
Nov 07, 2013
- add more properties to processJnlpAttributes() · f5e26bc3
  tcarver authored 11 years ago
  
  f5e26bc3
- remove unused import · 37313fab
  tcarver authored 11 years ago
  
  37313fab
Nov 05, 2013
- updates for test · 657b45d4
  tcarver authored 11 years ago
  
  657b45d4
- test for selenocysteine qualifier · b2a78f42
  tcarver authored 11 years ago
  
  b2a78f42
- optionally remove product qualifier from CDS marked as a pseudogene · 38ce6003
  tcarver authored 11 years ago
  
  38ce6003
- optionally remove products from pseudogenes · f3c18d0c
  tcarver authored 11 years ago
  
  f3c18d0c
Oct 24, 2013
- add read_only jnlp property · 4c791abc
  tcarver authored 11 years ago
  
  4c791abc
Oct 23, 2013
- JNLP properties need to begin with jnlp · ad3ee2a1
  tcarver authored 11 years ago
  
  ad3ee2a1
Oct 15, 2013
- add option to adjust individual panel heights in ACT · 0a3441ff
  tcarver authored 11 years ago
  
  0a3441ff
- clear the phaseButtonGroup when no phase is set for a given feature key · 6d3fcd74
  tcarver authored 11 years ago
  
  6d3fcd74
Oct 11, 2013
- simplify updatePanelState() · 285054aa
  tcarver authored 11 years ago
  
  285054aa
- tidy · 4023a857
  tcarver authored 11 years ago
  
  4023a857

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