Commits · 2cb15b642e6d0a814d923edb592321e35b2bb2cc · violethaze74 / Artemis

Sep 03, 2009
- revert back to version 1.65 · 2cb15b64
  tjc authored 15 years ago
  2cb15b64
- removed debugging statement · 395d1445
  gv1 authored 15 years ago
  395d1445
- removed gff-version to gff3 export · ae964582
  gv1 authored 15 years ago
  ae964582
- copy the header if a GFFDocumentEntry is created from a DatabaseDocumentEntry · 575dc2eb
  tjc authored 15 years ago
  575dc2eb
- improve message to user · 3729986d
  tjc authored 15 years ago
  3729986d
- use getChadoGeneByAnyCurrentName if gene is not found · 1ae80748
  tjc authored 15 years ago
  1ae80748
- add getChadoGeneByAnyCurrentName() · d431fb5e
  tjc authored 15 years ago
  d431fb5e
Sep 02, 2009
- added gff-version to gff3 export · c9e97a52
  gv1 authored 15 years ago
  c9e97a52
Sep 01, 2009
- use reference sequence · 1c2c28eb
  tjc authored 15 years ago
  1c2c28eb
- update · f5d4a56b
  tjc authored 15 years ago
  f5d4a56b
- changes to handle ortho/paralogs that do not have a match feature but just... · d19c3f1b
  tjc authored 15 years ago
  d19c3f1b
- include product in updateQualifierString · d51767a8
  tjc authored 15 years ago
  d51767a8
- add deleteFeatureRelationship · 77880591
  tjc authored 15 years ago
  77880591
- add GoBox logging · f05b687f
  tjc authored 15 years ago
  f05b687f
- tidy log messages · 13d380ea
  tjc authored 15 years ago
  13d380ea
- fix for adding multiple GO terms with the same GOid · aff017c8
  tjc authored 15 years ago
  aff017c8
Aug 28, 2009
- updates · c99fd5e5
  tjc authored 15 years ago
  c99fd5e5
- change to getLazyClustersByFeatureIds to include orthologs that are connected... · ac7290bd
  tjc authored 15 years ago
  ac7290bd
- look for orthologs made from feature_relationship connections with no match feature · 49d8f233
  tjc authored 15 years ago
  49d8f233
Aug 27, 2009
- jam updates · 5bb4ff53
  tjc authored 15 years ago
  5bb4ff53
Aug 26, 2009
- update · 31957638
  tjc authored 15 years ago
  31957638
- update · 6a6281b4
  tjc authored 15 years ago
  6a6281b4
Aug 25, 2009
- update · 661e27f3
  tjc authored 15 years ago
  661e27f3
- ignore obsolete features when exporting from the database · cfbeeea8
  tjc authored 15 years ago
  cfbeeea8
Aug 24, 2009
- add alignment viewer · 05b260d0
  tjc authored 15 years ago
  05b260d0
Aug 20, 2009
- modified to use UI · 2d473e73
  gv1 authored 15 years ago
  2d473e73
- tidied up · a8ed2346
  gv1 authored 15 years ago
  a8ed2346
- replaced stars with spaces in password entry · f614b7a7
  gv1 authored 15 years ago
  f614b7a7
- made less verbose on the console · f1e31546
  gv1 authored 15 years ago
  f1e31546
- fixed so that all command line parameters are read in when in console mode,... · 57732458
  gv1 authored 15 years ago
  57732458
- fixed a type in the main parameter help listing · 8c9acc5f
  gv1 authored 15 years ago
  8c9acc5f
- A helper class to hide password fields for the UI. · c204b3c1
  gv1 authored 15 years ago
  c204b3c1
- Modified to work with JDK 5 · c76b4107
  gv1 authored 15 years ago
  c76b4107
- update · b77404be
  tjc authored 15 years ago
  b77404be
Aug 19, 2009
- fix for finding duplicate qualifiers · 87dc805f
  tjc authored 15 years ago
  87dc805f
Aug 18, 2009
- check if the product is already in the database and add /gene to the gene and polypeptide · 31caaa77
  tjc authored 15 years ago
  31caaa77
- show definition for riley class as a tooltip. · 9fd872aa
  tjc authored 15 years ago
  9fd872aa
- synchronise the polypeptide and exon colours · ab24a9af
  tjc authored 15 years ago
  ab24a9af
- increase number of shades for heat map · bc32651b
  tjc authored 15 years ago
  bc32651b
Aug 17, 2009
- in database mode set a qualifier on the polypeptide as well as CDS feature · e73ac096
  tjc authored 15 years ago
  e73ac096

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