Commits · 3004787cfe3f5c4a545f6fee28d2536f100bdf4b · violethaze74 / Artemis

Mar 20, 2018
- Set theme jekyll-theme-cayman · 3004787c
  Sara Sjunnebo authored 7 years ago
  
  3004787c
Mar 09, 2018
- Merge pull request #238 from sanger-pathogens/v17_patch_branch · 5495ee34
  Kev authored 7 years ago
  
  small increase in splash height for ubuntu
  v17.0.1 Unverified
  
  5495ee34
- small increase in splash height for ubuntu · 808bc7d6
  “kpepper” authored 7 years ago
  
  808bc7d6
- Merge pull request #237 from sanger-pathogens/v17_patch_branch · 8b3f2fe2
  Kev authored 7 years ago
  
  V17 patch branch
  Unverified
  
  8b3f2fe2
Mar 06, 2018
- Small change to handling of bam/cram loading exceptions and upped project version number. · 8575517f
  “kpepper” authored 7 years ago
  
  8575517f
Mar 02, 2018
- Added new splash screen image · 54c4cfdc
  “kpepper” authored 7 years ago
  
  54c4cfdc
Feb 13, 2018
- Merge pull request #235 from sanger-pathogens/v17_patch_branch · 8951e2bc
  Kev authored 7 years ago
  
  Rebranded splash screen
  Unverified
  
  8951e2bc
- Rebranded splash screen · 783a9e0c
  “kpepper” authored 7 years ago
  
  783a9e0c
Feb 12, 2018
- Merge pull request #234 from kpepper/artemis_unit_testing · 69d60e74
  Kev authored 7 years ago
  
  Changed BamUtilsTest class to cope with connect exception.
  v17.0.0 Unverified
  
  69d60e74
- Changed BamUtilsTest class to cope with connect exception. · 858a6d9a
  “kpepper” authored 7 years ago
  
  858a6d9a
- Merge pull request #233 from kpepper/artemis_unit_testing · 3b3a534e
  Kev authored 7 years ago
  
  Artemis unit testing v17.0.0 branch merge
  Unverified
  
  3b3a534e
- small ant test script change · c6846581
  “kpepper” authored 7 years ago
  
  c6846581
Feb 09, 2018
- Added new environment variable check for sanger · 009162f6
  “kpepper” authored 7 years ago
  
  009162f6
Feb 06, 2018
- Fix for ticket 503254 - ACT was not validating input file arguments · 97bb871d
  “kpepper” authored 7 years ago
  
  97bb871d
Feb 05, 2018
- Fixed RT ticket 467433 - Genbank files with a DBSOURCE field failed to load · 4e9118d6
  “kpepper” authored 7 years ago
  
  4e9118d6
Feb 02, 2018
- Minor script changes. Property name change · 63ee98bb
  “kpepper” authored 7 years ago
  
  63ee98bb
Jan 31, 2018
- removed a test · 67a1048e
  “kpepper” authored 7 years ago
  
  67a1048e
Jan 29, 2018
- travis yml change · d17ff58b
  “kpepper” authored 7 years ago
  
  d17ff58b
- travis yml change · 92174bce
  “kpepper” authored 7 years ago
  
  92174bce
- travis yml change · 2b197081
  “kpepper” authored 7 years ago
  
  2b197081
- travis yml change · e0b4b3b9
  “kpepper” authored 7 years ago
  
  e0b4b3b9
- travis yml change · f73afedd
  “kpepper” authored 7 years ago
  
  f73afedd
- Changed travis yml file to only run the unit tests on the oracle 8 build · 3f6709cf
  “kpepper” authored 7 years ago
  
  3f6709cf
- Updated change log and log4j.properties · 286b16b7
  “kpepper” authored 7 years ago
  
  286b16b7
Jan 26, 2018
- Fixed negative array index exception in BamView (does not affect Artemis) · 4ca2af92
  “kpepper” authored 7 years ago
  
  4ca2af92
Jan 25, 2018

Changed EBI DbFetch code so that the function works again. Added latest picard... · c743a79e

“kpepper” authored 7 years ago

Changed EBI DbFetch code so that the function works again. Added latest picard jar. More work on CRAM file loading. Updated/added scripts for application start. Small tweaks to makefile/ant. Removed gff2embl and gene_builder. Recreated evosuite tests.

c743a79e

Jan 08, 2018
- Fixed deprecated feature warnings for Java 1.8 · d058e6da
  “kpepper” authored 7 years ago
  
  d058e6da
- Addition of CRAM file handling. Update of various jars. Addition of more unit tests. · 79862887
  “kpepper” authored 7 years ago
  
  79862887
Oct 23, 2017

Initial BAM View changes to fix selection issues, zooming into secondary... · df7ccbf5

“kpepper” authored 7 years ago

Initial BAM View changes to fix selection issues, zooming into secondary alignments, erroneous collapsing of reads with same start/end position and display of SNPs - related to RT ticket 597652

df7ccbf5

Oct 09, 2017
- Changes to new unit tests · 98746e43
  “kpepper” authored 7 years ago
  
  98746e43
Oct 02, 2017

First commit of unit test changes. Added more manual unit tests, an EvoSuite... · 695d03ac

“kpepper” authored 7 years ago

First commit of unit test changes. Added more manual unit tests, an EvoSuite regression set and coverage reporting. Moved Java version for Artemis to Java 8. Ripped out redundant Corba code.

695d03ac

Sep 25, 2017
- New unit tests added. Some todos still to be sorted out · 50c7da35
  “kpepper” authored 7 years ago
  
  50c7da35
Jan 27, 2017
- Merge pull request #230 from vaofford/artemis_v16.0.18 · f784a130
  vaofford authored 8 years ago
  
  update scratch108 to scratch118 - v16.0.18
  f784a130
- update scratch108 to scratch118 - v16.0.18 · 9ddec45c
  vaofford authored 8 years ago
  
  9ddec45c
Nov 23, 2016
- update urls · 8db07ec5
  andrewjpage authored 8 years ago
  
  8db07ec5
- inc artemis version · 0100f4ea
  andrewjpage authored 8 years ago
  
  v16.0.17
  
  0100f4ea
- Update AUTHORS · e28c880b
  andrewjpage authored 8 years ago
  
  e28c880b
- Merge pull request #226 from aslett1/master · ae1aa71a
  andrewjpage authored 8 years ago
  
  Updated NCBI blast URL to https
  ae1aa71a
Nov 22, 2016
- Updated NCBI blast URL to https · 5cfe2073
  Martin Aslett authored 8 years ago
  
  5cfe2073
Sep 12, 2016
- Merge pull request #225 from satta/master · 17958dc8
  Sascha Steinbiss authored 8 years ago
  
  version bump
  17958dc8

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