Commits · 374f5eb57739cb15a9aa8bf39cfbe58b3cb80931 · violethaze74 / Artemis

Sep 23, 2009

colour reads in stack view based on if they are unique and if the have a mapped paired read · 374f5eb5
tjc authored 15 years ago
```
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@11885 ee4ac58c-ac51-4696-9907-e4b3aa274f04
```
374f5eb5

provide an alternative stack view of the reads · 68f45074

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@11882 ee4ac58c-ac51-4696-9907-e4b3aa274f04

68f45074

fix for zoom in Artemis at the sequence end · 9af05a51

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@11866 ee4ac58c-ac51-4696-9907-e4b3aa274f04

9af05a51

draw SNPs on reads · 6232a285

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@11864 ee4ac58c-ac51-4696-9907-e4b3aa274f04

6232a285

fix for drawing a read when its mate is not in the view · 828883d1

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@11863 ee4ac58c-ac51-4696-9907-e4b3aa274f04

828883d1

Sep 22, 2009

fixes for display the end of the read alignment in Artemis · 4c0e3e9e

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@11855 ee4ac58c-ac51-4696-9907-e4b3aa274f04

4c0e3e9e

update · bd7d9489

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@11853 ee4ac58c-ac51-4696-9907-e4b3aa274f04

bd7d9489

Sep 21, 2009

repaint after adjusting scale · 920fae92

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@11844 ee4ac58c-ac51-4696-9907-e4b3aa274f04

920fae92

revalidate when zooming in · 0625b19a

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@11840 ee4ac58c-ac51-4696-9907-e4b3aa274f04

0625b19a

Sep 19, 2009

fixes to zooming · 1c693e2e

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@11833 ee4ac58c-ac51-4696-9907-e4b3aa274f04

1c693e2e

Sep 17, 2009

auto hide buttons and further updates · 511c30a7

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@11810 ee4ac58c-ac51-4696-9907-e4b3aa274f04

511c30a7

Sep 16, 2009

changes to assist integration into Artemis · 92438cba

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@11795 ee4ac58c-ac51-4696-9907-e4b3aa274f04

92438cba

Sep 04, 2009

zoom buttons · 28777b05

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@11728 ee4ac58c-ac51-4696-9907-e4b3aa274f04

28777b05

use AlignmentBlocks to the sequence and to display SNPs · 0519b98c

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@11727 ee4ac58c-ac51-4696-9907-e4b3aa274f04

0519b98c

updates · 70900f3c

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@11722 ee4ac58c-ac51-4696-9907-e4b3aa274f04

70900f3c

Sep 03, 2009

changes to use Picard · 501fc6e3

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@11714 ee4ac58c-ac51-4696-9907-e4b3aa274f04

501fc6e3

Sep 01, 2009

use reference sequence · 1c2c28eb

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@11687 ee4ac58c-ac51-4696-9907-e4b3aa274f04

1c2c28eb

Aug 28, 2009

updates · c99fd5e5

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@11664 ee4ac58c-ac51-4696-9907-e4b3aa274f04

c99fd5e5

Aug 27, 2009

jam updates · 5bb4ff53

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@11660 ee4ac58c-ac51-4696-9907-e4b3aa274f04

5bb4ff53

Aug 26, 2009

update · 31957638

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@11654 ee4ac58c-ac51-4696-9907-e4b3aa274f04

31957638

update · 6a6281b4

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@11649 ee4ac58c-ac51-4696-9907-e4b3aa274f04

6a6281b4

Aug 25, 2009

update · 661e27f3

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@11648 ee4ac58c-ac51-4696-9907-e4b3aa274f04

661e27f3

Aug 24, 2009

add alignment viewer · 05b260d0

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@11637 ee4ac58c-ac51-4696-9907-e4b3aa274f04

05b260d0

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