Commits · 3e43d27edefb89f0b66aa03ce60317e48b205895 · violethaze74 / Artemis

Jun 11, 2018

Merge pull request #262 from sanger-pathogens/github_issue_261_fix · 3e43d27e
kpepper authored 6 years ago
```
Fixed GitHub issue 261 - escaped line feed left in manifest when buil…
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3e43d27e

Fixed GitHub issue 261 - escaped line feed left in manifest when building on... · 5572c3ea

“kpepper” authored 6 years ago

Fixed GitHub issue 261 - escaped line feed left in manifest when building on linux. Also changed name of dnaplotter jar to be consistent and because linux is case sensitive so it should exactly match the name in the script

5572c3ea

May 29, 2018
- Merge pull request #260 from sanger-pathogens/bam_caching_bug_fix · b26e4019
  kpepper authored 6 years ago
  
  Fix for RT issue 624271 - bam data caching issue
  b26e4019
- Fix for RT issue 624271 · 4ab241f4
  “kpepper” authored 6 years ago
  
  4ab241f4
Mar 29, 2018
- Merge pull request #258 from ssjunnebo/589110_readme · 0b71a89f
  Sara Sjunnebo authored 7 years ago
  
  589110 readme
  0b71a89f
- badges on separate rows · 352518a3
  Sara Sjunnebo authored 7 years ago
  
  352518a3
- Add publication badges · 7a464e7d
  Sara Sjunnebo authored 7 years ago
  
  7a464e7d
Mar 26, 2018
- Merge pull request #245 from ssjunnebo/574328_update_readme · d24f2960
  Sara Sjunnebo authored 7 years ago
  
  574328 update readme
  d24f2960
- updated readme · 8c0d7ab1
  Sara Sjunnebo authored 7 years ago
  
  8c0d7ab1
Mar 23, 2018
- updated readme, draft · 84ea8b3b
  Sara Sjunnebo authored 7 years ago
  
  84ea8b3b
Mar 20, 2018
- Set theme jekyll-theme-cayman · 3004787c
  Sara Sjunnebo authored 7 years ago
  
  3004787c
Mar 09, 2018
- Merge pull request #238 from sanger-pathogens/v17_patch_branch · 5495ee34
  Kev authored 7 years ago
  
  small increase in splash height for ubuntu
  v17.0.1
  
  5495ee34
- small increase in splash height for ubuntu · 808bc7d6
  “kpepper” authored 7 years ago
  
  808bc7d6
- Merge pull request #237 from sanger-pathogens/v17_patch_branch · 8b3f2fe2
  Kev authored 7 years ago
  
  V17 patch branch
  8b3f2fe2
Mar 06, 2018
- Small change to handling of bam/cram loading exceptions and upped project version number. · 8575517f
  “kpepper” authored 7 years ago
  
  8575517f
Mar 02, 2018
- Added new splash screen image · 54c4cfdc
  “kpepper” authored 7 years ago
  
  54c4cfdc
Feb 13, 2018
- Merge pull request #235 from sanger-pathogens/v17_patch_branch · 8951e2bc
  Kev authored 7 years ago
  
  Rebranded splash screen
  8951e2bc
- Rebranded splash screen · 783a9e0c
  “kpepper” authored 7 years ago
  
  783a9e0c
Feb 12, 2018
- Merge pull request #234 from kpepper/artemis_unit_testing · 69d60e74
  Kev authored 7 years ago
  
  Changed BamUtilsTest class to cope with connect exception.
  v17.0.0
  
  69d60e74
- Changed BamUtilsTest class to cope with connect exception. · 858a6d9a
  “kpepper” authored 7 years ago
  
  858a6d9a
- Merge pull request #233 from kpepper/artemis_unit_testing · 3b3a534e
  Kev authored 7 years ago
  
  Artemis unit testing v17.0.0 branch merge
  3b3a534e
- small ant test script change · c6846581
  “kpepper” authored 7 years ago
  
  c6846581
Feb 09, 2018
- Added new environment variable check for sanger · 009162f6
  “kpepper” authored 7 years ago
  
  009162f6
Feb 06, 2018
- Fix for ticket 503254 - ACT was not validating input file arguments · 97bb871d
  “kpepper” authored 7 years ago
  
  97bb871d
Feb 05, 2018
- Fixed RT ticket 467433 - Genbank files with a DBSOURCE field failed to load · 4e9118d6
  “kpepper” authored 7 years ago
  
  4e9118d6
Feb 02, 2018
- Minor script changes. Property name change · 63ee98bb
  “kpepper” authored 7 years ago
  
  63ee98bb
Jan 31, 2018
- removed a test · 67a1048e
  “kpepper” authored 7 years ago
  
  67a1048e
Jan 29, 2018
- travis yml change · d17ff58b
  “kpepper” authored 7 years ago
  
  d17ff58b
- travis yml change · 92174bce
  “kpepper” authored 7 years ago
  
  92174bce
- travis yml change · 2b197081
  “kpepper” authored 7 years ago
  
  2b197081
- travis yml change · e0b4b3b9
  “kpepper” authored 7 years ago
  
  e0b4b3b9
- travis yml change · f73afedd
  “kpepper” authored 7 years ago
  
  f73afedd
- Changed travis yml file to only run the unit tests on the oracle 8 build · 3f6709cf
  “kpepper” authored 7 years ago
  
  3f6709cf
- Updated change log and log4j.properties · 286b16b7
  “kpepper” authored 7 years ago
  
  286b16b7
Jan 26, 2018
- Fixed negative array index exception in BamView (does not affect Artemis) · 4ca2af92
  “kpepper” authored 7 years ago
  
  4ca2af92
Jan 25, 2018

Changed EBI DbFetch code so that the function works again. Added latest picard... · c743a79e

“kpepper” authored 7 years ago

Changed EBI DbFetch code so that the function works again. Added latest picard jar. More work on CRAM file loading. Updated/added scripts for application start. Small tweaks to makefile/ant. Removed gff2embl and gene_builder. Recreated evosuite tests.

c743a79e

Jan 08, 2018
- Fixed deprecated feature warnings for Java 1.8 · d058e6da
  “kpepper” authored 7 years ago
  
  d058e6da
- Addition of CRAM file handling. Update of various jars. Addition of more unit tests. · 79862887
  “kpepper” authored 7 years ago
  
  79862887
Oct 23, 2017

Initial BAM View changes to fix selection issues, zooming into secondary... · df7ccbf5

“kpepper” authored 7 years ago

Initial BAM View changes to fix selection issues, zooming into secondary alignments, erroneous collapsing of reads with same start/end position and display of SNPs - related to RT ticket 597652

df7ccbf5

Oct 09, 2017
- Changes to new unit tests · 98746e43
  “kpepper” authored 7 years ago
  
  98746e43

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