Commits · 479bc3f66322dd74b3ef8de31e333afe6346405a · violethaze74 / Artemis

Aug 12, 2005

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3386 ee4ac58c-ac51-4696-9907-e4b3aa274f04

479bc3f6

add j2ssh jars to classpath · 8f1e6f2e

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3385 ee4ac58c-ac51-4696-9907-e4b3aa274f04

8f1e6f2e

add ssh plugin to classpath · 2312bfc4

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3384 ee4ac58c-ac51-4696-9907-e4b3aa274f04

2312bfc4

remember login details · 863435b9

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3383 ee4ac58c-ac51-4696-9907-e4b3aa274f04

863435b9

j2ssh-artemis-plugin · e1643557

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3382 ee4ac58c-ac51-4696-9907-e4b3aa274f04

e1643557

SshPSUClient jarred up · bce68d7e

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3381 ee4ac58c-ac51-4696-9907-e4b3aa274f04

bce68d7e

add other blasts and fastx · b1294a6a

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3380 ee4ac58c-ac51-4696-9907-e4b3aa274f04

b1294a6a

added blastn · 16c45877

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3379 ee4ac58c-ac51-4696-9907-e4b3aa274f04

16c45877

rename ssh client · 9c2afc1f

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3378 ee4ac58c-ac51-4696-9907-e4b3aa274f04

9c2afc1f

Aug 11, 2005

j2ssh properties file · cd2c0e0e

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3377 ee4ac58c-ac51-4696-9907-e4b3aa274f04

cd2c0e0e

j2ssh related stuff · 9992c333

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3375 ee4ac58c-ac51-4696-9907-e4b3aa274f04

9992c333

readme for j2ssh plugin · ccb52e2d

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3374 ee4ac58c-ac51-4696-9907-e4b3aa274f04

ccb52e2d

Aug 10, 2005

j2ssh plugin · 9c926596

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3364 ee4ac58c-ac51-4696-9907-e4b3aa274f04

9c926596

Aug 08, 2005

fix for alpha · 492bc530

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3338 ee4ac58c-ac51-4696-9907-e4b3aa274f04

492bc530

fix for macs · 2842c4ce

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3337 ee4ac58c-ac51-4696-9907-e4b3aa274f04

2842c4ce

fix expander buttons for alpha · 6c97d745

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3336 ee4ac58c-ac51-4696-9907-e4b3aa274f04

6c97d745

order sequence names · f806669f

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3335 ee4ac58c-ac51-4696-9907-e4b3aa274f04

f806669f

Aug 05, 2005

allow null featureprop.value · 7c0fb6d0

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3334 ee4ac58c-ac51-4696-9907-e4b3aa274f04

7c0fb6d0

change sql select statement to get same rank properties · 44159f6c

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3333 ee4ac58c-ac51-4696-9907-e4b3aa274f04

44159f6c

change sql select statement for features with no feature properties · d050ffb4

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3332 ee4ac58c-ac51-4696-9907-e4b3aa274f04

d050ffb4

introduce expander buttons · 4852c17a

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3331 ee4ac58c-ac51-4696-9907-e4b3aa274f04

4852c17a

Aug 04, 2005

fix splitting gff · 9afce9c4

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3329 ee4ac58c-ac51-4696-9907-e4b3aa274f04

9afce9c4

split gff feature up into entries · e50a29c6

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3328 ee4ac58c-ac51-4696-9907-e4b3aa274f04

e50a29c6

Aug 03, 2005

add comments · 14b1ae60

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3323 ee4ac58c-ac51-4696-9907-e4b3aa274f04

14b1ae60

Jul 29, 2005

chado insert & delete featureprop - fix for splice sites · 8d35f84d

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3312 ee4ac58c-ac51-4696-9907-e4b3aa274f04

8d35f84d

chado insert & delete featureprop · f4611a9e

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3311 ee4ac58c-ac51-4696-9907-e4b3aa274f04

f4611a9e

chado insert & delete featureprop · a2a599b8

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3310 ee4ac58c-ac51-4696-9907-e4b3aa274f04

a2a599b8

Jul 28, 2005

chado update qualifiers · 6cd840e6

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3304 ee4ac58c-ac51-4696-9907-e4b3aa274f04

6cd840e6

Jul 27, 2005

chado qualifier updates · 431ddf9e

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3302 ee4ac58c-ac51-4696-9907-e4b3aa274f04

431ddf9e

chado updates · 830ce054

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3300 ee4ac58c-ac51-4696-9907-e4b3aa274f04

830ce054

chado support · 98c93ea9

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3286 ee4ac58c-ac51-4696-9907-e4b3aa274f04

98c93ea9

Jul 21, 2005

fmin and fmax start at zero so need to add one · 3fe22f65

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3259 ee4ac58c-ac51-4696-9907-e4b3aa274f04

3fe22f65

fmin and fmax start at zero so need to add one · 5cf8e6e5

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3258 ee4ac58c-ac51-4696-9907-e4b3aa274f04

5cf8e6e5

Jul 20, 2005

fix for GFFStreamFeature in duplicate() · 0dc21503

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3247 ee4ac58c-ac51-4696-9907-e4b3aa274f04

0dc21503

encode gff · 5ddc7921

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3239 ee4ac58c-ac51-4696-9907-e4b3aa274f04

5ddc7921

retrieve time modified · 3f3a6f40

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3237 ee4ac58c-ac51-4696-9907-e4b3aa274f04

3f3a6f40

automatic hook-up to chado db with -Dchado option · d52261d7

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3232 ee4ac58c-ac51-4696-9907-e4b3aa274f04

d52261d7

Jul 19, 2005

change sql for retrieving features to make GFF · 6e418ddc

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3226 ee4ac58c-ac51-4696-9907-e4b3aa274f04

6e418ddc

specifying command line chado url · 680b7a33

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3212 ee4ac58c-ac51-4696-9907-e4b3aa274f04

680b7a33

Jul 18, 2005

join exons and add parents to GFF generated from database · 1acacbdf

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3201 ee4ac58c-ac51-4696-9907-e4b3aa274f04

1acacbdf

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