Commits · 49bd515857b1dfe95d49b229b89a34072a64862f · violethaze74 / Artemis

Mar 25, 2009

add tests · 49bd5158

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10276 ee4ac58c-ac51-4696-9907-e4b3aa274f04

49bd5158

tests for transferring annotation · 08177c20

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10275 ee4ac58c-ac51-4696-9907-e4b3aa274f04

08177c20

fix formats · 03683463

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10274 ee4ac58c-ac51-4696-9907-e4b3aa274f04

03683463

Mar 24, 2009

update · e4affaf4

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10270 ee4ac58c-ac51-4696-9907-e4b3aa274f04

e4affaf4

make iBatis connection object static · 9a46006f

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10269 ee4ac58c-ac51-4696-9907-e4b3aa274f04

9a46006f

reduce max number of connections in pool · 8f4dc6e6

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10268 ee4ac58c-ac51-4696-9907-e4b3aa274f04

8f4dc6e6

changes for test suite · 6600fd7c

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10266 ee4ac58c-ac51-4696-9907-e4b3aa274f04

6600fd7c

add curation to polypeptide · 3f7d769b

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10257 ee4ac58c-ac51-4696-9907-e4b3aa274f04

3f7d769b

minor updates · 208a9bd5

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10248 ee4ac58c-ac51-4696-9907-e4b3aa274f04

208a9bd5

Mar 23, 2009

include qualifier values for entire gene model if the active feature is part of a gene model · 79927114
tjc authored 16 years ago
```
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10243 ee4ac58c-ac51-4696-9907-e4b3aa274f04
```
79927114

updates · dab29535

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10230 ee4ac58c-ac51-4696-9907-e4b3aa274f04

dab29535

change predicate to fix multiple transcripts · 8b81877c

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10225 ee4ac58c-ac51-4696-9907-e4b3aa274f04

8b81877c

Mar 20, 2009

reformat · 788cb049

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10219 ee4ac58c-ac51-4696-9907-e4b3aa274f04

788cb049

further development - addition of overwrite function and changes to the look of the tool · ff4be7c8
tjc authored 16 years ago
```
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10218 ee4ac58c-ac51-4696-9907-e4b3aa274f04
```
ff4be7c8

Mar 19, 2009

add qualifier options and change layout · 0898f022

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10198 ee4ac58c-ac51-4696-9907-e4b3aa274f04

0898f022

use set_obsolete_on_delete in for deleting features from the database · 413f7995

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10176 ee4ac58c-ac51-4696-9907-e4b3aa274f04

413f7995

change the delete features option so that optionally it makes obsolete... · f1c82078

tjc authored 16 years ago

change the delete features option so that optionally it makes obsolete (defined by set_obsolete_on_delete)


git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10175 ee4ac58c-ac51-4696-9907-e4b3aa274f04

f1c82078

add set_obsolete_on_delete option · e17732d5

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10174 ee4ac58c-ac51-4696-9907-e4b3aa274f04

e17732d5

added setObsoleteChanged() · 4c8c4496

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10172 ee4ac58c-ac51-4696-9907-e4b3aa274f04

4c8c4496

add getFeatureEdit() · c5e50be9

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10171 ee4ac58c-ac51-4696-9907-e4b3aa274f04

c5e50be9

add setObsoleteChanged() · 0fc6e05c

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10170 ee4ac58c-ac51-4696-9907-e4b3aa274f04

0fc6e05c

Mar 18, 2009

ensure the tool does not transfer and duplicate existing qualifiers · e56375d1

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10162 ee4ac58c-ac51-4696-9907-e4b3aa274f04

e56375d1

Mar 17, 2009

fix/revert for speed when zoomed out and changing the window size · 3930aaa1

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10152 ee4ac58c-ac51-4696-9907-e4b3aa274f04

3930aaa1

allow abbreviated as well as full version of evidence code. Also now uses the... · 4252d77b

tjc authored 16 years ago

allow abbreviated as well as full version of evidence code. Also now uses the WrapTextArea to display term


git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10129 ee4ac58c-ac51-4696-9907-e4b3aa274f04

4252d77b

allow abbreviated as well as full version of evidence code · d0117080

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10128 ee4ac58c-ac51-4696-9907-e4b3aa274f04

d0117080

use WrapTextArea to display product · a8a93f5c

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10127 ee4ac58c-ac51-4696-9907-e4b3aa274f04

a8a93f5c

add vertical strut between controlled_curation fields · 0423399b

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10126 ee4ac58c-ac51-4696-9907-e4b3aa274f04

0423399b

this is the old ProductTextArea class made more general · bab44f45

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10125 ee4ac58c-ac51-4696-9907-e4b3aa274f04

bab44f45

Mar 16, 2009

strip out uniprot DE line categories · 83791d57

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10122 ee4ac58c-ac51-4696-9907-e4b3aa274f04

83791d57

update · dbe77c5c

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10111 ee4ac58c-ac51-4696-9907-e4b3aa274f04

dbe77c5c

fix for multiple fasta GFF files · 7ded5268

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10110 ee4ac58c-ac51-4696-9907-e4b3aa274f04

7ded5268

fix for viewing user plots when the sequence has been flipped · 3e9bce49

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10108 ee4ac58c-ac51-4696-9907-e4b3aa274f04

3e9bce49

Mar 13, 2009

fix so plot flips when flipping the strand · 155e413f

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10102 ee4ac58c-ac51-4696-9907-e4b3aa274f04

155e413f

Mar 06, 2009

updates · 8f3b4737

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10024 ee4ac58c-ac51-4696-9907-e4b3aa274f04

8f3b4737

add header · 2e28ccbe

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10015 ee4ac58c-ac51-4696-9907-e4b3aa274f04

2e28ccbe

add embl header · 70b1cfe7

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10014 ee4ac58c-ac51-4696-9907-e4b3aa274f04

70b1cfe7

fix for forward and reverse strand overviews · 19d102f0

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10009 ee4ac58c-ac51-4696-9907-e4b3aa274f04

19d102f0

Mar 05, 2009

fix for single cut site · 31211acb

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10006 ee4ac58c-ac51-4696-9907-e4b3aa274f04

31211acb

use same scale for multiple gels · d6f65f8e

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10005 ee4ac58c-ac51-4696-9907-e4b3aa274f04

d6f65f8e

show file name if no cut sites found · 744d7b25

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10004 ee4ac58c-ac51-4696-9907-e4b3aa274f04

744d7b25

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