Commits · 4cb4afb4189776c718dcc36de4f50c59d64bca0d · violethaze74 / Artemis

Nov 15, 2005

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3824 ee4ac58c-ac51-4696-9907-e4b3aa274f04

4cb4afb4

implement passwd connections · d2ecd7cc

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3823 ee4ac58c-ac51-4696-9907-e4b3aa274f04

d2ecd7cc

tidy · ccbebcd9

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3821 ee4ac58c-ac51-4696-9907-e4b3aa274f04

ccbebcd9

tidy & fix · 4613a682

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3820 ee4ac58c-ac51-4696-9907-e4b3aa274f04

4613a682

reverse complement implemented for contigs · 5ccb08d4

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3819 ee4ac58c-ac51-4696-9907-e4b3aa274f04

5ccb08d4

Nov 13, 2005

fixes for compiling · 0d517344

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3818 ee4ac58c-ac51-4696-9907-e4b3aa274f04

0d517344

exclude ExternalProgramUtil.java from classpath · 26e2d3bb

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3817 ee4ac58c-ac51-4696-9907-e4b3aa274f04

26e2d3bb

Nov 11, 2005

eclipse project · c069ccd2

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3814 ee4ac58c-ac51-4696-9907-e4b3aa274f04

c069ccd2

eclipse classpath · 8bb78a83

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3813 ee4ac58c-ac51-4696-9907-e4b3aa274f04

8bb78a83

update from jobcontrol in cvs · bed4a42d

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3812 ee4ac58c-ac51-4696-9907-e4b3aa274f04

bed4a42d

Nov 10, 2005

fix ibatis gff for next feature · 46195d21

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3809 ee4ac58c-ac51-4696-9907-e4b3aa274f04

46195d21

fix for overlapping CDS features when creating introns · 28707a56

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3808 ee4ac58c-ac51-4696-9907-e4b3aa274f04

28707a56

Nov 09, 2005

fix ibatis · d63a84eb

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3807 ee4ac58c-ac51-4696-9907-e4b3aa274f04

d63a84eb

Nov 08, 2005

catch NullPointerException clicking outside tree node · a062e348

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3806 ee4ac58c-ac51-4696-9907-e4b3aa274f04

a062e348

ibatis added · 5705be66

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3805 ee4ac58c-ac51-4696-9907-e4b3aa274f04

5705be66

add ibatis to classpath · abae7fe0

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3804 ee4ac58c-ac51-4696-9907-e4b3aa274f04

abae7fe0

ibatis objects · 2132d60b

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3803 ee4ac58c-ac51-4696-9907-e4b3aa274f04

2132d60b

ibatis config · e0c61f9e

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3802 ee4ac58c-ac51-4696-9907-e4b3aa274f04

e0c61f9e

ibatis2 · d34f4a27

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3801 ee4ac58c-ac51-4696-9907-e4b3aa274f04

d34f4a27

add ibatis classes · f1a4dacc

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3800 ee4ac58c-ac51-4696-9907-e4b3aa274f04

f1a4dacc

Nov 01, 2005

fix rewind to previous result set · b5ac7f70

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3798 ee4ac58c-ac51-4696-9907-e4b3aa274f04

b5ac7f70

fix for matches at the very end of the sequence · 02b51944

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3797 ee4ac58c-ac51-4696-9907-e4b3aa274f04

02b51944

tidy and fix entry name · aea79a95

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3796 ee4ac58c-ac51-4696-9907-e4b3aa274f04

aea79a95

Oct 31, 2005

write gff out with debug flag on · bcb15251

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3795 ee4ac58c-ac51-4696-9907-e4b3aa274f04

bcb15251

ssh fasta searches fix · b770afe2

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3794 ee4ac58c-ac51-4696-9907-e4b3aa274f04

b770afe2

fix codon usage · d7b7c74a

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3793 ee4ac58c-ac51-4696-9907-e4b3aa274f04

d7b7c74a

Oct 28, 2005

fix FeatureList problem of overlaying over other objects · 7fa3d098

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3789 ee4ac58c-ac51-4696-9907-e4b3aa274f04

7fa3d098

Oct 26, 2005

implement ssh file reading in act · f06e72c1

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3788 ee4ac58c-ac51-4696-9907-e4b3aa274f04

f06e72c1

tidy · 86fe7965

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3787 ee4ac58c-ac51-4696-9907-e4b3aa274f04

86fe7965

Oct 25, 2005

fix SQ line · 9c13c2b3

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3782 ee4ac58c-ac51-4696-9907-e4b3aa274f04

9c13c2b3

Oct 20, 2005

fix scrollbar for Mac OS X Aqua lokk & feel · 6f8010db

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3781 ee4ac58c-ac51-4696-9907-e4b3aa274f04

6f8010db

changes required for tiger · d4270c67

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3780 ee4ac58c-ac51-4696-9907-e4b3aa274f04

d4270c67

Oct 19, 2005

make complementRange() private · aaf5b546

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3779 ee4ac58c-ac51-4696-9907-e4b3aa274f04

aaf5b546

Oct 18, 2005

use chars in reverseComplement() · 0c052836

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3778 ee4ac58c-ac51-4696-9907-e4b3aa274f04

0c052836

Oct 17, 2005

order just by abbreviation · 7cb30322

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3777 ee4ac58c-ac51-4696-9907-e4b3aa274f04

7cb30322

speed up createNodes() · f9f0d6e6

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3776 ee4ac58c-ac51-4696-9907-e4b3aa274f04

f9f0d6e6

Oct 14, 2005

move to using ByteBuffer · 76527fea

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3775 ee4ac58c-ac51-4696-9907-e4b3aa274f04

76527fea

byte array buffer · fe824fd3

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3774 ee4ac58c-ac51-4696-9907-e4b3aa274f04

fe824fd3

Oct 13, 2005

memory optimise · fc45b931

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3773 ee4ac58c-ac51-4696-9907-e4b3aa274f04

fc45b931

tidy · 12e4b60e

tjc authored 19 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3772 ee4ac58c-ac51-4696-9907-e4b3aa274f04

12e4b60e

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