Commits · 6e0438d4acdb3b5b5960e262ce0aad26b252188b · violethaze74 / Artemis

Feb 19, 2009

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9839 ee4ac58c-ac51-4696-9907-e4b3aa274f04

6e0438d4

define EMBOSS_ROOT property · c0d183f1

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9838 ee4ac58c-ac51-4696-9907-e4b3aa274f04

c0d183f1

stop ant-build being copied · 2e2e4b61

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9837 ee4ac58c-ac51-4696-9907-e4b3aa274f04

2e2e4b61

fix for successive builds · 017f7261

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9836 ee4ac58c-ac51-4696-9907-e4b3aa274f04

017f7261

ignore test suite when copying · 5a98f037

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9835 ee4ac58c-ac51-4696-9907-e4b3aa274f04

5a98f037

Feb 18, 2009

changes for test suite and put DNAPlotter panel in a scrollpane · c7d40b39

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9824 ee4ac58c-ac51-4696-9907-e4b3aa274f04

c7d40b39

test suite · 257ed706

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9823 ee4ac58c-ac51-4696-9907-e4b3aa274f04

257ed706

Feb 17, 2009

change to make obsolete the default rather than permanently deleting features · 134ebef1

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9817 ee4ac58c-ac51-4696-9907-e4b3aa274f04

134ebef1

Feb 16, 2009

fix for version · c994d60b

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9813 ee4ac58c-ac51-4696-9907-e4b3aa274f04

c994d60b

update · 29173b2e

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9812 ee4ac58c-ac51-4696-9907-e4b3aa274f04

29173b2e

fix for rounding errors when drawing small angle arcs · d2fe49fb

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9811 ee4ac58c-ac51-4696-9907-e4b3aa274f04

d2fe49fb

Feb 12, 2009

new release · fda8f5ca

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9804 ee4ac58c-ac51-4696-9907-e4b3aa274f04

fda8f5ca

Feb 10, 2009

writing out sequence files · 0aae0f69

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9794 ee4ac58c-ac51-4696-9907-e4b3aa274f04

0aae0f69

log transform user plot option · fe083285

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9788 ee4ac58c-ac51-4696-9907-e4b3aa274f04

fe083285

add ncbi search options · 5e9b2f14

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9777 ee4ac58c-ac51-4696-9907-e4b3aa274f04

5e9b2f14

log4j · f69e27dc

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9776 ee4ac58c-ac51-4696-9907-e4b3aa274f04

f69e27dc

include database options · e2d440ca

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9775 ee4ac58c-ac51-4696-9907-e4b3aa274f04

e2d440ca

Feb 09, 2009

add print ps option · 9b2b08f9

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9772 ee4ac58c-ac51-4696-9907-e4b3aa274f04

9b2b08f9

add save as sequin format · e574ee50

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9771 ee4ac58c-ac51-4696-9907-e4b3aa274f04

e574ee50

update · 5288f54c

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9770 ee4ac58c-ac51-4696-9907-e4b3aa274f04

5288f54c

update · a1471b4a

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9769 ee4ac58c-ac51-4696-9907-e4b3aa274f04

a1471b4a

update genetic code link · aaaf1960

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9768 ee4ac58c-ac51-4696-9907-e4b3aa274f04

aaaf1960

update · 3308d0e4

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9767 ee4ac58c-ac51-4696-9907-e4b3aa274f04

3308d0e4

update · 6aecf899

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9766 ee4ac58c-ac51-4696-9907-e4b3aa274f04

6aecf899

updates · fa649bcf

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9765 ee4ac58c-ac51-4696-9907-e4b3aa274f04

fa649bcf

update · 75c6e309

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9764 ee4ac58c-ac51-4696-9907-e4b3aa274f04

75c6e309

Feb 07, 2009

explicit link · 8bf32153

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9763 ee4ac58c-ac51-4696-9907-e4b3aa274f04

8bf32153

chado doc · b52fa99c

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9762 ee4ac58c-ac51-4696-9907-e4b3aa274f04

b52fa99c

remove · 071715df

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9761 ee4ac58c-ac51-4696-9907-e4b3aa274f04

071715df

Feb 06, 2009

remove unused variables and make public methods protected · a2606ab3

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9760 ee4ac58c-ac51-4696-9907-e4b3aa274f04

a2606ab3

add gene list to transfer annotation tool · 0a842d0e

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9759 ee4ac58c-ac51-4696-9907-e4b3aa274f04

0a842d0e

add getGeneNameList · 4aca2a07

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9758 ee4ac58c-ac51-4696-9907-e4b3aa274f04

4aca2a07

get gene list from MatchPanel · e6d9f9be

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9757 ee4ac58c-ac51-4696-9907-e4b3aa274f04

e6d9f9be

update · eb4e5851

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9756 ee4ac58c-ac51-4696-9907-e4b3aa274f04

eb4e5851

DNAPlotter · 82d44a30

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9755 ee4ac58c-ac51-4696-9907-e4b3aa274f04

82d44a30

Feb 05, 2009

update to 2009 · fca28ecf

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9754 ee4ac58c-ac51-4696-9907-e4b3aa274f04

fca28ecf

Feb 04, 2009

changes to allow for FeatureCvTerm.rank column to be absent · 5b1b4cad

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9753 ee4ac58c-ac51-4696-9907-e4b3aa274f04

5b1b4cad

remove organism join for statements mapping to map-feature-with-residues-result · 8d1ba6d8

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9752 ee4ac58c-ac51-4696-9907-e4b3aa274f04

8d1ba6d8

Feb 03, 2009

updates for gff · 03b02278

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9751 ee4ac58c-ac51-4696-9907-e4b3aa274f04

03b02278

fix for ignoring blank values · c6efd225

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9750 ee4ac58c-ac51-4696-9907-e4b3aa274f04

c6efd225

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