Commits · 733490fd53e92414b5ae46a12e69581196e3419b · violethaze74 / Artemis

Sep 13, 2013
- add getCDSFeatureByIdPrefix() · 733490fd
  tcarver authored 11 years ago
  
  733490fd
Sep 12, 2013
- use Utils.getEntryGroup() · 37271790
  tcarver authored 11 years ago
  
  37271790
- add getEntryGroup() · faf8bdac
  tcarver authored 11 years ago
  
  faf8bdac
- use assertEquals · 5b079b46
  tcarver authored 11 years ago
  
  5b079b46
- update · 3fb32052
  tcarver authored 11 years ago
  
  3fb32052
- update junit · a9ab0cfe
  tcarver authored 11 years ago
  
  a9ab0cfe
- multiple sequence GFF · 84c881e3
  tcarver authored 11 years ago
  
  84c881e3
- feature offset in GFF with multiple sequences · 2222c866
  tcarver authored 11 years ago
  
  2222c866
Sep 09, 2013
- validation tests · 72ef2ef5
  tcarver authored 11 years ago
  
  72ef2ef5
Sep 06, 2013
- add GFF files · 4413158f
  tcarver authored 11 years ago
  
  4413158f
Mar 27, 2013
- change parameter for TransferAnnotationTool.transferAnnotation() · 931918db
  tcarver authored 11 years ago
  
  931918db
Feb 08, 2012
- tests for writing variant sites · 18218409
  tcarver authored 13 years ago
  
  18218409
- add VCF test data · b290981b
  tcarver authored 13 years ago
  
  b290981b
Jan 18, 2012
- changes for multi-allele calls · 2c4d9fd2
  tcarver authored 13 years ago
  
  2c4d9fd2
Sep 09, 2011
- changes for VCFview constructor · a1ec6abc
  tcarver authored 13 years ago
  
  a1ec6abc
Jul 26, 2011
- fix to run in headless · 5aee7aff
  tcarver authored 13 years ago
  
  5aee7aff
Mar 29, 2011

fixes for making reference uppercase · d8e7dce6

tjc authored 13 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15838 ee4ac58c-ac51-4696-9907-e4b3aa274f04

d8e7dce6

Mar 28, 2011

fix for headers - removal of space · 9329e0b2

tjc authored 13 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15827 ee4ac58c-ac51-4696-9907-e4b3aa274f04

9329e0b2

Mar 18, 2011

add another feature to test · e84e979e

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15754 ee4ac58c-ac51-4696-9907-e4b3aa274f04

e84e979e

remove annotation that is not needed · 58431406

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15753 ee4ac58c-ac51-4696-9907-e4b3aa274f04

58431406

bcf test · d6963eb9

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15752 ee4ac58c-ac51-4696-9907-e4b3aa274f04

d6963eb9

MAL1 test data · 95e05483

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15751 ee4ac58c-ac51-4696-9907-e4b3aa274f04

95e05483

Mar 17, 2011

add more to testFeatureWriteFastaSNP() · 9c108ccb

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15745 ee4ac58c-ac51-4696-9907-e4b3aa274f04

9c108ccb

Mar 16, 2011

add feature test · 5432ef46

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15742 ee4ac58c-ac51-4696-9907-e4b3aa274f04

5432ef46

fix for headless · 6efc447f

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15737 ee4ac58c-ac51-4696-9907-e4b3aa274f04

6efc447f

set headless · 71e7b491

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15736 ee4ac58c-ac51-4696-9907-e4b3aa274f04

71e7b491

tests for writing out sequences based on VCF data · a13476fe

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15732 ee4ac58c-ac51-4696-9907-e4b3aa274f04

a13476fe

Mar 26, 2009

change to transferAnnotation() · a9dbf8e2

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10289 ee4ac58c-ac51-4696-9907-e4b3aa274f04

a9dbf8e2

Mar 25, 2009

add tests · 49bd5158

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10276 ee4ac58c-ac51-4696-9907-e4b3aa274f04

49bd5158

tests for transferring annotation · 08177c20

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10275 ee4ac58c-ac51-4696-9907-e4b3aa274f04

08177c20

fix formats · 03683463

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10274 ee4ac58c-ac51-4696-9907-e4b3aa274f04

03683463

Feb 19, 2009

update · 2911d94e

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9840 ee4ac58c-ac51-4696-9907-e4b3aa274f04

2911d94e

print EMBOSS_ROOT · 6e0438d4

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9839 ee4ac58c-ac51-4696-9907-e4b3aa274f04

6e0438d4

define EMBOSS_ROOT property · c0d183f1

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9838 ee4ac58c-ac51-4696-9907-e4b3aa274f04

c0d183f1

stop ant-build being copied · 2e2e4b61

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9837 ee4ac58c-ac51-4696-9907-e4b3aa274f04

2e2e4b61

Feb 18, 2009

test suite · 257ed706

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9823 ee4ac58c-ac51-4696-9907-e4b3aa274f04

257ed706

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