Recreated Evosuite tests. Updated README from master branch. Various pom changes including removing the ssh plugin jar. Removed latex files from docs directory as these are no superceded by docx manuals that can be exported to html/pdf

Fixed GitHub issue 261 - escaped line feed left in manifest when buil…

Fixed GitHub issue 261 - escaped line feed left in manifest when building on linux. Also changed name of dnaplotter jar to be consistent and because linux is case sensitive so it should exactly match the name in the script

Fix for RT issue 624271 - bam data caching issue