Commits · 8fb6adf9ac6261e714abe62453d5597359f54c80 · violethaze74 / Artemis

Oct 04, 2018
- Added debug flag · 8fb6adf9
  “kpepper” authored 6 years ago
  
  8fb6adf9
- Added a mvn initialize call to before install section · e8e52fb6
  “kpepper” authored 6 years ago
  
  e8e52fb6
Oct 03, 2018
- try to force travis to install the local jars · 01cd9fc8
  “kpepper” authored 6 years ago
  
  01cd9fc8
- Use mvn install target · 14e03985
  “kpepper” authored 6 years ago
  
  14e03985
- Simplified to get it working again · 80bfcbe4
  “kpepper” authored 6 years ago
  
  80bfcbe4
- Added missing local ibatis jar · e9f170f8
  “kpepper” authored 6 years ago
  
  e9f170f8
- Temporarily disabled tests for travis · 72871ca8
  “kpepper” authored 6 years ago
  
  72871ca8
- Changed mvn command · 59ca1da9
  “kpepper” authored 6 years ago
  
  59ca1da9
- Description text change · 75daa5de
  “kpepper” authored 6 years ago
  
  75daa5de
- Added evosuite folder to gitignore for the moment · 8aafe7a7
  “kpepper” authored 6 years ago
  
  8aafe7a7
- Project restructuring changes · 19e9cfa3
  “kpepper” authored 6 years ago
  
  19e9cfa3
Sep 24, 2018
- Updated picard jar to 2.18.14, which includes fixes for htsdjk github issues 1065 and 1127 · 421e94ed
  “kpepper” authored 6 years ago
  
  421e94ed
- Removed redundant old j2ssh-artemis-plugin.jar · b8981e8d
  “kpepper” authored 6 years ago
  
  b8981e8d
- Removed redundant commons logging jar · a3cc874f
  “kpepper” authored 6 years ago
  
  a3cc874f
- Recreated Evosuite tests. Updated README from master branch. Various pom... · 773cc840
  “kpepper” authored 6 years ago
  
  Recreated Evosuite tests. Updated README from master branch. Various pom changes including removing the ssh plugin jar. Removed latex files from docs directory as these are no superceded by docx manuals that can be exported to html/pdf
  773cc840
Jun 07, 2018
- Adding a few evosuite tests · d9786791
  “kpepper” authored 6 years ago
  
  d9786791
Mar 21, 2018
- Copied in changes from v17.0.1 release · 50c0dc1c
  “kpepper” authored 7 years ago
  
  50c0dc1c
- First commit of Maven build changes · 6152b5f9
  “kpepper” authored 7 years ago
  
  6152b5f9
Feb 13, 2018
- Merge pull request #235 from sanger-pathogens/v17_patch_branch · 8951e2bc
  Kev authored 7 years ago
  
  Rebranded splash screen
  8951e2bc
- Rebranded splash screen · 783a9e0c
  “kpepper” authored 7 years ago
  
  783a9e0c
Feb 12, 2018
- Merge pull request #234 from kpepper/artemis_unit_testing · 69d60e74
  Kev authored 7 years ago
  
  Changed BamUtilsTest class to cope with connect exception.
  v17.0.0
  
  69d60e74
- Changed BamUtilsTest class to cope with connect exception. · 858a6d9a
  “kpepper” authored 7 years ago
  
  858a6d9a
- Merge pull request #233 from kpepper/artemis_unit_testing · 3b3a534e
  Kev authored 7 years ago
  
  Artemis unit testing v17.0.0 branch merge
  3b3a534e
- small ant test script change · c6846581
  “kpepper” authored 7 years ago
  
  c6846581
Feb 09, 2018
- Added new environment variable check for sanger · 009162f6
  “kpepper” authored 7 years ago
  
  009162f6
Feb 06, 2018
- Fix for ticket 503254 - ACT was not validating input file arguments · 97bb871d
  “kpepper” authored 7 years ago
  
  97bb871d
Feb 05, 2018
- Fixed RT ticket 467433 - Genbank files with a DBSOURCE field failed to load · 4e9118d6
  “kpepper” authored 7 years ago
  
  4e9118d6
Feb 02, 2018
- Minor script changes. Property name change · 63ee98bb
  “kpepper” authored 7 years ago
  
  63ee98bb
Jan 31, 2018
- removed a test · 67a1048e
  “kpepper” authored 7 years ago
  
  67a1048e
Jan 29, 2018
- travis yml change · d17ff58b
  “kpepper” authored 7 years ago
  
  d17ff58b
- travis yml change · 92174bce
  “kpepper” authored 7 years ago
  
  92174bce
- travis yml change · 2b197081
  “kpepper” authored 7 years ago
  
  2b197081
- travis yml change · e0b4b3b9
  “kpepper” authored 7 years ago
  
  e0b4b3b9
- travis yml change · f73afedd
  “kpepper” authored 7 years ago
  
  f73afedd
- Changed travis yml file to only run the unit tests on the oracle 8 build · 3f6709cf
  “kpepper” authored 7 years ago
  
  3f6709cf
- Updated change log and log4j.properties · 286b16b7
  “kpepper” authored 7 years ago
  
  286b16b7
Jan 26, 2018
- Fixed negative array index exception in BamView (does not affect Artemis) · 4ca2af92
  “kpepper” authored 7 years ago
  
  4ca2af92
Jan 25, 2018

Changed EBI DbFetch code so that the function works again. Added latest picard... · c743a79e

“kpepper” authored 7 years ago

Changed EBI DbFetch code so that the function works again. Added latest picard jar. More work on CRAM file loading. Updated/added scripts for application start. Small tweaks to makefile/ant. Removed gff2embl and gene_builder. Recreated evosuite tests.

c743a79e

Jan 08, 2018
- Fixed deprecated feature warnings for Java 1.8 · d058e6da
  “kpepper” authored 7 years ago
  
  d058e6da
- Addition of CRAM file handling. Update of various jars. Addition of more unit tests. · 79862887
  “kpepper” authored 7 years ago
  
  79862887

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