Commits · 9329e0b20e1880fc0d3bc6ab1f8523b04eaaaa4e · violethaze74 / Artemis

Mar 28, 2011

fix for headers - removal of space · 9329e0b2

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15827 ee4ac58c-ac51-4696-9907-e4b3aa274f04

9329e0b2

non-variants are light grey and insertions are magenta · d87b4c18

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15826 ee4ac58c-ac51-4696-9907-e4b3aa274f04

d87b4c18

AF1 filtered - except for non-variant sites · 34a2759f

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15825 ee4ac58c-ac51-4696-9907-e4b3aa274f04

34a2759f

change header to write out reference without a space before the name · 678ee14b

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15824 ee4ac58c-ac51-4696-9907-e4b3aa274f04

678ee14b

update · 68fbff1a

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15821 ee4ac58c-ac51-4696-9907-e4b3aa274f04

68fbff1a

Mar 25, 2011

update · 75ad636a

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15819 ee4ac58c-ac51-4696-9907-e4b3aa274f04

75ad636a

fix for hiding BAM panel display · 8e9390ed

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15818 ee4ac58c-ac51-4696-9907-e4b3aa274f04

8e9390ed

move clone window option · 213078c7

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15817 ee4ac58c-ac51-4696-9907-e4b3aa274f04

213078c7

change border to dark grey · c1173ce0

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15816 ee4ac58c-ac51-4696-9907-e4b3aa274f04

c1173ce0

Mar 24, 2011

changes for BamView update · 82fd2eb2

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15812 ee4ac58c-ac51-4696-9907-e4b3aa274f04

82fd2eb2

change addDisplayAdjustmentListener() visibility to public · 70edd024

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15811 ee4ac58c-ac51-4696-9907-e4b3aa274f04

70edd024

changes for BamView update · 3953309d

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15810 ee4ac58c-ac51-4696-9907-e4b3aa274f04

3953309d

add option to clone BamView panel · 6540bdbd

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15809 ee4ac58c-ac51-4696-9907-e4b3aa274f04

6540bdbd

move code to BamView constructor · 387dc46b

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15807 ee4ac58c-ac51-4696-9907-e4b3aa274f04

387dc46b

remove unused import · 150e261a

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15805 ee4ac58c-ac51-4696-9907-e4b3aa274f04

150e261a

standardise with label · b25237f7

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15804 ee4ac58c-ac51-4696-9907-e4b3aa274f04

b25237f7

ensure log option disabled for views other than inferred size · 66b161e8

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15803 ee4ac58c-ac51-4696-9907-e4b3aa274f04

66b161e8

Mar 23, 2011

update · 3d27b1f2

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15801 ee4ac58c-ac51-4696-9907-e4b3aa274f04

3d27b1f2

update to v1.41 · 07ef94ac

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15799 ee4ac58c-ac51-4696-9907-e4b3aa274f04

07ef94ac

start to implement generics · 5adfcdf1

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15795 ee4ac58c-ac51-4696-9907-e4b3aa274f04

5adfcdf1

start to implement generics · 16690cb6

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15794 ee4ac58c-ac51-4696-9907-e4b3aa274f04

16690cb6

Mar 22, 2011

add with/from to controlled_curation · c7db7e64

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15788 ee4ac58c-ac51-4696-9907-e4b3aa274f04

c7db7e64

add with/from to controlled_curation · 9363d47e

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15787 ee4ac58c-ac51-4696-9907-e4b3aa274f04

9363d47e

remove qualifiers wrongly included · 4a41a78a

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15786 ee4ac58c-ac51-4696-9907-e4b3aa274f04

4a41a78a

Mar 21, 2011

update · 790f5bcd

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15776 ee4ac58c-ac51-4696-9907-e4b3aa274f04

790f5bcd

update from EBI files · 9594973c

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15775 ee4ac58c-ac51-4696-9907-e4b3aa274f04

9594973c

trim white space · 73ec4a49

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15774 ee4ac58c-ac51-4696-9907-e4b3aa274f04

73ec4a49

trim any white space · d66241a4

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15773 ee4ac58c-ac51-4696-9907-e4b3aa274f04

d66241a4

Mar 18, 2011

fix for BCF with multiple samples and add unit tests · 89ce08d5

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15755 ee4ac58c-ac51-4696-9907-e4b3aa274f04

89ce08d5

add another feature to test · e84e979e

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15754 ee4ac58c-ac51-4696-9907-e4b3aa274f04

e84e979e

remove annotation that is not needed · 58431406

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15753 ee4ac58c-ac51-4696-9907-e4b3aa274f04

58431406

bcf test · d6963eb9

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15752 ee4ac58c-ac51-4696-9907-e4b3aa274f04

d6963eb9

MAL1 test data · 95e05483

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15751 ee4ac58c-ac51-4696-9907-e4b3aa274f04

95e05483

fix for multiple samples · 9cece20f

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15750 ee4ac58c-ac51-4696-9907-e4b3aa274f04

9cece20f

Mar 17, 2011

add more to testFeatureWriteFastaSNP() · 9c108ccb

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15745 ee4ac58c-ac51-4696-9907-e4b3aa274f04

9c108ccb

change visibility of wrapString() · 3648e75a

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15744 ee4ac58c-ac51-4696-9907-e4b3aa274f04

3648e75a

fix for insertions · e6b6d703

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15743 ee4ac58c-ac51-4696-9907-e4b3aa274f04

e6b6d703

Mar 16, 2011

add feature test · 5432ef46

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15742 ee4ac58c-ac51-4696-9907-e4b3aa274f04

5432ef46

changes for test suite · 5823c826

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15740 ee4ac58c-ac51-4696-9907-e4b3aa274f04

5823c826

fix for insertions and changes for test suite · ab386f07

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15739 ee4ac58c-ac51-4696-9907-e4b3aa274f04

ab386f07

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