Commits · 9e460449b9ecbb1018f0337e48cdf00529f5725f · violethaze74 / Artemis

Sep 17, 2012
- fix for hiding BAM's · 9e460449
  tcarver authored 12 years ago
  
  9e460449
- tidy · 2784decc
  tcarver authored 12 years ago
  
  2784decc
- tidy · 48c2a704
  tcarver authored 12 years ago
  
  48c2a704
- tidy · 255fd786
  tcarver authored 12 years ago
  
  255fd786
- use SequenceComboBox · 4b6965ba
  tcarver authored 12 years ago
  
  4b6965ba
- add SequenceComboBox(String sequenceNames[]) constructor · c145dd0a
  tcarver authored 12 years ago
  
  c145dd0a
- listen to reference changes in VCF panel · b5ed7aed
  tcarver authored 12 years ago
  
  b5ed7aed
- update · 497d402d
  tcarver authored 12 years ago
  
  497d402d
Sep 14, 2012
- tidy · c99479da
  tcarver authored 12 years ago
  
  c99479da
- add getContigs() · 8c907ba1
  tcarver authored 12 years ago
  
  8c907ba1
- add listener to update reference sequence · 81450504
  tcarver authored 12 years ago
  
  81450504
- fix for showing BAM and VCF files · bc43051d
  tcarver authored 12 years ago
  
  bc43051d
Sep 12, 2012
- update · 0abe28dd
  tcarver authored 12 years ago
  
  0abe28dd
- fix for unit tests · d9eed7d8
  tcarver authored 12 years ago
  
  d9eed7d8
- add /pseudogene qualifier · 5229f6f7
  tcarver authored 12 years ago
  
  5229f6f7
- use /pseudogene as well as /pseudo qualifier · 172e5a8b
  tcarver authored 12 years ago
  
  172e5a8b
- look for /pseudogene as well as /pseudo · 24472982
  tcarver authored 12 years ago
  
  24472982
- change to using /pseudogene qualifier · cb71fdef
  tcarver authored 12 years ago
  
  cb71fdef
- tidy · 0d972f6e
  tcarver authored 12 years ago
  
  0d972f6e
- look for /pseudogene as well as /pseudo qualifier · d331d69d
  tcarver authored 12 years ago
  
  d331d69d
- look for /pseudogene as well as /pseudo qualifier · add6859f
  tcarver authored 12 years ago
  
  add6859f
Sep 11, 2012
- provide option to concatenate sequences or use FASTA index · 23b7d60d
  tcarver authored 12 years ago
  
  23b7d60d
- add useIndex() · 74cb3e25
  tcarver authored 12 years ago
  
  74cb3e25
- define SNP arraylist as List · 4a404267
  tcarver authored 12 years ago
  
  4a404267
- update · 14f86bd8
  tcarver authored 12 years ago
  
  14f86bd8
- changes to BamView · a331431a
  tcarver authored 12 years ago
  
  a331431a
- use getSNPs() to get SNP positions so when showing SNPs the duplicate · 12563cab
  tcarver authored 12 years ago
  
  reads are displayed separately in stack view
  12563cab
Sep 07, 2012
- add BamView options · 21f57421
  tcarver authored 12 years ago
  
  21f57421
- introduce threading and max read coverage threshold · 28bc5f0d
  tcarver authored 12 years ago
  
  28bc5f0d
Aug 31, 2012
- tidy · 8200f192
  tcarver authored 12 years ago
  
  8200f192
Aug 30, 2012
- use BamViewRecord to store BAM index rather than setting SAMRecord · 204eb711
  tcarver authored 12 years ago
  
  attribute
  204eb711
Aug 29, 2012
- set visibility of setFromChar() to private · e87e27fe
  tcarver authored 12 years ago
  
  e87e27fe
- update · b285df58
  tcarver authored 12 years ago
  
  b285df58
Aug 28, 2012
- fix for ID · dcae5acb
  tcarver authored 12 years ago
  
  dcae5acb
- add ID to fasta header when writing all bases · b41b8204
  tcarver authored 12 years ago
  
  b41b8204
Aug 20, 2012
- update · 504a116f
  tcarver authored 12 years ago
  
  504a116f
- add rfam sequence searching · e2ef2cd3
  tcarver authored 12 years ago
  
  e2ef2cd3
Aug 17, 2012
- updates for base similarity · 9fb7b137
  tcarver authored 12 years ago
  
  9fb7b137
- update · effec326
  tcarver authored 12 years ago
  
  effec326
- update · 59dedcc0
  tcarver authored 12 years ago
  
  59dedcc0

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