Commits · a1ec6abca97a254cb080622570cc5e8c0fd08bac · violethaze74 / Artemis

Sep 09, 2011
- changes for VCFview constructor · a1ec6abc
  tcarver authored 13 years ago
  
  a1ec6abc
- add a close option to VCF toolbar · cdaf96b5
  tcarver authored 13 years ago
  
  cdaf96b5
Sep 08, 2011
- fix for both 3' and 5' partials · cb387734
  tcarver authored 13 years ago
  
  cb387734
- fix for getting the list of BAM/VCF only when OK is clicked · 0f68ce0a
  tcarver authored 13 years ago
  
  0f68ce0a
- fix for cloned BamView windows to have independent list of BAM files · bf20aa09
  tcarver authored 13 years ago
  
  bf20aa09
- add close option for individual BamView window · bd483cda
  tcarver authored 13 years ago
  
  bd483cda
Sep 07, 2011
- update · a3309559
  tcarver authored 13 years ago
  
  a3309559
- add ShortCut · 0ce58c75
  tcarver authored 13 years ago
  
  0ce58c75
- shortcut changed in Preferences are saved between sessions · 76745c23
  tcarver authored 13 years ago
  
  76745c23
- shortcut changed in Preferences are saved between sessions · 133b0c43
  tcarver authored 13 years ago
  
  133b0c43
- use Options.CACHE_PATH · ee3e385f
  tcarver authored 13 years ago
  
  ee3e385f
- use Options.CACHE_PATH for caching database menu · ad010737
  tcarver authored 13 years ago
  
  ad010737
- define a cache file system path · ca5bc456
  tcarver authored 13 years ago
  
  ca5bc456
- shortcut changed in Preferences are saved between sessions · 33f05a9a
  tcarver authored 13 years ago
  
  33f05a9a
Sep 06, 2011
- update · 1aaf8466
  tcarver authored 13 years ago
  
  1aaf8466
- work around for backward compatibility with old BCF files · a8326c70
  tcarver authored 13 years ago
  
  a8326c70
Sep 01, 2011
- changed to use SHIFT to drag ends when zoomed out · 715e36dd
  tcarver authored 13 years ago
  
  715e36dd
Aug 31, 2011
- alt key can be used to drag ends · 78d6990c
  tcarver authored 13 years ago
  
  78d6990c
Aug 30, 2011
- reset the seen_plus variable · 62d99099
  tcarver authored 13 years ago
  
  62d99099
Aug 24, 2011
- change handleSelenocysteine - removing complement from position as this · c6db7d75
  tcarver authored 13 years ago
  
  is not required
  c6db7d75
- extra check for GTF · 4ca49318
  tcarver authored 13 years ago
  
  4ca49318
- fix for reading GTF · 99987903
  tcarver authored 13 years ago
  
  99987903
Aug 23, 2011
- more support for GTF format · 3c92c279
  tcarver authored 13 years ago
  
  3c92c279
- support for GTF · c25558fa
  tcarver authored 13 years ago
  
  c25558fa
- add GFFStreamFeature · b74c01c4
  tcarver authored 13 years ago
  
  b74c01c4
- tidy · 9fbe9945
  tcarver authored 13 years ago
  
  9fbe9945
- update · e1e43e72
  tcarver authored 13 years ago
  
  e1e43e72
- use isStrandOK() to check strand is consistent within the gene model · 0b7e5aee
  tcarver authored 13 years ago
  
  0b7e5aee
- fix for JComboBox index fasta entries · 15d3cc75
  tcarver authored 13 years ago
  
  15d3cc75
Aug 22, 2011
- correct Pfam message · c3304078
  tcarver authored 13 years ago
  
  c3304078
Aug 18, 2011
- update · a4b02a04
  tcarver authored 13 years ago
  
  a4b02a04
- typo fix · 9626651b
  tcarver authored 13 years ago
  
  9626651b
- handle partials for any feature type · 9d00177e
  tcarver authored 13 years ago
  
  9d00177e
- use a non-modal dialog to report change of reference sequence · 846f8f7c
  tcarver authored 13 years ago
  
  846f8f7c
Aug 17, 2011
- fix for handling partial genes · 55dea181
  tcarver authored 13 years ago
  
  55dea181
- fix for partials and UTR ordering · 7edab300
  tcarver authored 13 years ago
  
  7edab300
Aug 16, 2011
- add read name to exception in showSNPsOnReads() · 364b4c48
  tcarver authored 13 years ago
  
  364b4c48
- update · 41759cdd
  tcarver authored 13 years ago
  
  41759cdd
Aug 11, 2011
- changes to allow for loading graphs into ACT from the command line with · bc08a23d
  tcarver authored 13 years ago
  
  -DuserplotX (where X is the sequence number) system properties
  bc08a23d
- update · 807ef087
  tcarver authored 13 years ago
  
  807ef087

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