Commits · a5b83e3a2cc459a7b833f291b1844ee76f59f2d5 · violethaze74 / Artemis

Jan 04, 2010

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12800 ee4ac58c-ac51-4696-9907-e4b3aa274f04

a5b83e3a

Dec 09, 2009

only show gene builder overview if a gene · 6ef2f5c6

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12591 ee4ac58c-ac51-4696-9907-e4b3aa274f04

6ef2f5c6

change default gene · 157236b3

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12590 ee4ac58c-ac51-4696-9907-e4b3aa274f04

157236b3

add checkbox for switching gene builder view · 4bbbba19

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12589 ee4ac58c-ac51-4696-9907-e4b3aa274f04

4bbbba19

fix for opening basic gene builder · 2bf4cc94

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12588 ee4ac58c-ac51-4696-9907-e4b3aa274f04

2bf4cc94

option to switch to basic gene builder · cdce9135

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12587 ee4ac58c-ac51-4696-9907-e4b3aa274f04

cdce9135

Dec 07, 2009

fix for updating multiple controlled_curations · 8e0072e7

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12577 ee4ac58c-ac51-4696-9907-e4b3aa274f04

8e0072e7

Dec 04, 2009

update · 767aa1ae

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12563 ee4ac58c-ac51-4696-9907-e4b3aa274f04

767aa1ae

fix for multiple prev_sys_ids · 602422b4

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12562 ee4ac58c-ac51-4696-9907-e4b3aa274f04

602422b4

Dec 01, 2009

use makeBorder() only in the basic gene builder · 960f3aad

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12528 ee4ac58c-ac51-4696-9907-e4b3aa274f04

960f3aad

update · ed36228f

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12525 ee4ac58c-ac51-4696-9907-e4b3aa274f04

ed36228f

show read bases when viewing details · f36ee129

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12524 ee4ac58c-ac51-4696-9907-e4b3aa274f04

f36ee129

add an option to plot on a log scale · 9b7179ee

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12520 ee4ac58c-ac51-4696-9907-e4b3aa274f04

9b7179ee

add mapq to filter options · 9c93fae3

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12512 ee4ac58c-ac51-4696-9907-e4b3aa274f04

9c93fae3

add BamView · 6cd49b42

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12511 ee4ac58c-ac51-4696-9907-e4b3aa274f04

6cd49b42

add fasta and fa to sequence_file_suffixes · dd248274

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12510 ee4ac58c-ac51-4696-9907-e4b3aa274f04

dd248274

Nov 30, 2009

samrecord filter changes · cffa8bda

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12505 ee4ac58c-ac51-4696-9907-e4b3aa274f04

cffa8bda

Add filter by flag option to BamView menu and a Read BAM option to standalone version · 42067a17
tjc authored 15 years ago
```
git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12504 ee4ac58c-ac51-4696-9907-e4b3aa274f04
```
42067a17

fix for transferring to single gene · 43186edc

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12490 ee4ac58c-ac51-4696-9907-e4b3aa274f04

43186edc

Nov 26, 2009

change visibility to public · aba36038

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12457 ee4ac58c-ac51-4696-9907-e4b3aa274f04

aba36038

Button Panel for Gene Builder · 1b071a4f

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12456 ee4ac58c-ac51-4696-9907-e4b3aa274f04

1b071a4f

updates and add toolbar · 5c938b39

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12455 ee4ac58c-ac51-4696-9907-e4b3aa274f04

5c938b39

add isEmpty · 99526a9c

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12454 ee4ac58c-ac51-4696-9907-e4b3aa274f04

99526a9c

use default QualifierTextArea constructor · a3cb306d

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12445 ee4ac58c-ac51-4696-9907-e4b3aa274f04

a3cb306d

add a references section · 5769e577

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12444 ee4ac58c-ac51-4696-9907-e4b3aa274f04

5769e577

add literature qualifier · f1dac945

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12443 ee4ac58c-ac51-4696-9907-e4b3aa274f04

f1dac945

Nov 24, 2009

fixes · 23106935

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12426 ee4ac58c-ac51-4696-9907-e4b3aa274f04

23106935

changes for adding in a new transcript and fixes · 67dc29dd

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12425 ee4ac58c-ac51-4696-9907-e4b3aa274f04

67dc29dd

change visibility of methods to add features · 41fb147e

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12424 ee4ac58c-ac51-4696-9907-e4b3aa274f04

41fb147e

show the CDS phase information · cc6ef182

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12422 ee4ac58c-ac51-4696-9907-e4b3aa274f04

cc6ef182

add option to show the names · 2359d012

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12421 ee4ac58c-ac51-4696-9907-e4b3aa274f04

2359d012

check that autogenerated peptide name is unique · 5d9524c5

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12420 ee4ac58c-ac51-4696-9907-e4b3aa274f04

5d9524c5

Nov 23, 2009

strip out non-embl parts of product line · b37b11f9

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12411 ee4ac58c-ac51-4696-9907-e4b3aa274f04

b37b11f9

fix for null obsolete qualifier · d8979a41

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12410 ee4ac58c-ac51-4696-9907-e4b3aa274f04

d8979a41

Nov 20, 2009

add apply and cancel buttons · 5de81c1b

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12395 ee4ac58c-ac51-4696-9907-e4b3aa274f04

5de81c1b

seperate classes for add and remove buttons · aac412a5

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12394 ee4ac58c-ac51-4696-9907-e4b3aa274f04

aac412a5

basic properties panel · b23c605b

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12393 ee4ac58c-ac51-4696-9907-e4b3aa274f04

b23c605b

updates to basic gene builder · 9c3f523a

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12392 ee4ac58c-ac51-4696-9907-e4b3aa274f04

9c3f523a

change visibility of obsoleteChanged to public · 5f6e4f4b

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12391 ee4ac58c-ac51-4696-9907-e4b3aa274f04

5f6e4f4b

Nov 19, 2009

move add synonym button · 771534e3

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12390 ee4ac58c-ac51-4696-9907-e4b3aa274f04

771534e3

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