Commits · c5bae4f3657b3284aed9f5d3d6f84aca53418162 · violethaze74 / Artemis

Jul 06, 2006

fixes for multiple transcripts · c5bae4f3

tjc authored 18 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4525 ee4ac58c-ac51-4696-9907-e4b3aa274f04

c5bae4f3

fix for multiple transcripts · 105c710d

tjc authored 18 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4524 ee4ac58c-ac51-4696-9907-e4b3aa274f04

105c710d

Jul 05, 2006

allow mutiple feature locations and lazy loading of featurelocs · 1aadea3e

tjc authored 18 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4519 ee4ac58c-ac51-4696-9907-e4b3aa274f04

1aadea3e

implement multiple locations for chado features · a78c8283

tjc authored 18 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4518 ee4ac58c-ac51-4696-9907-e4b3aa274f04

a78c8283

use lazy loading for feature locations · 532b9b0e

tjc authored 18 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4517 ee4ac58c-ac51-4696-9907-e4b3aa274f04

532b9b0e

add srcfeature_id · 69846f2c

tjc authored 18 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4516 ee4ac58c-ac51-4696-9907-e4b3aa274f04

69846f2c

chadoToGFF takes a featureloc · 0229dc93

tjc authored 18 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4515 ee4ac58c-ac51-4696-9907-e4b3aa274f04

0229dc93

Jul 04, 2006

changes for the gene builder · fea24403

tjc authored 18 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4514 ee4ac58c-ac51-4696-9907-e4b3aa274f04

fea24403

changes to ChadoCanonicalGene · 18ed4653

tjc authored 18 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4513 ee4ac58c-ac51-4696-9907-e4b3aa274f04

18ed4653

changes for standalone gene editor · a7ea1702

tjc authored 18 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4512 ee4ac58c-ac51-4696-9907-e4b3aa274f04

a7ea1702

clean up · 36d05721

tjc authored 18 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4511 ee4ac58c-ac51-4696-9907-e4b3aa274f04

36d05721

updates · 2a20e4fd

tjc authored 18 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4499 ee4ac58c-ac51-4696-9907-e4b3aa274f04

2a20e4fd

speed up combineGeneFeatures · b78a9d09

tjc authored 18 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4498 ee4ac58c-ac51-4696-9907-e4b3aa274f04

b78a9d09

make constructor public · f39499d2

tjc authored 18 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4497 ee4ac58c-ac51-4696-9907-e4b3aa274f04

f39499d2

tidy and split out chadoToGFF · 47218e27

tjc authored 18 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4496 ee4ac58c-ac51-4696-9907-e4b3aa274f04

47218e27

remove print statement · 7adabc80

tjc authored 18 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4495 ee4ac58c-ac51-4696-9907-e4b3aa274f04

7adabc80

tidy docs · d83954f2

tjc authored 18 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4494 ee4ac58c-ac51-4696-9907-e4b3aa274f04

d83954f2

add feature_relationship list · 085ea8f7

tjc authored 18 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4493 ee4ac58c-ac51-4696-9907-e4b3aa274f04

085ea8f7

add lazy loading of feature_relationships · e1f7f3ee

tjc authored 18 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4492 ee4ac58c-ac51-4696-9907-e4b3aa274f04

e1f7f3ee

Jun 27, 2006

fix · 4cb0fb6b

tjc authored 18 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4467 ee4ac58c-ac51-4696-9907-e4b3aa274f04

4cb0fb6b

gc_frame added · 1a2073c7

tjc authored 18 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4466 ee4ac58c-ac51-4696-9907-e4b3aa274f04

1a2073c7

Jun 26, 2006

fix for featureloc updates · fbb674fb

tjc authored 18 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4465 ee4ac58c-ac51-4696-9907-e4b3aa274f04

fbb674fb

Jun 23, 2006

use char[] instead of String · 7d061de6

tjc authored 18 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4462 ee4ac58c-ac51-4696-9907-e4b3aa274f04

7d061de6

add legend and use char arrays instead of String · de3677fb

tjc authored 18 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4459 ee4ac58c-ac51-4696-9907-e4b3aa274f04

de3677fb

complement method for char arrays · b1fb1a45

tjc authored 18 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4458 ee4ac58c-ac51-4696-9907-e4b3aa274f04

b1fb1a45

Jun 22, 2006

update usage line · c62180c0

tjc authored 18 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4446 ee4ac58c-ac51-4696-9907-e4b3aa274f04

c62180c0

Jun 21, 2006

add extra_qualifiers · 064ffdbc

tjc authored 18 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4445 ee4ac58c-ac51-4696-9907-e4b3aa274f04

064ffdbc

change legend · 7708f244

tjc authored 18 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4444 ee4ac58c-ac51-4696-9907-e4b3aa274f04

7708f244

Jun 20, 2006

draw legend · ff2547b7

tjc authored 18 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4443 ee4ac58c-ac51-4696-9907-e4b3aa274f04

ff2547b7

draw legends on plots · e7a1b9ed

tjc authored 18 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4440 ee4ac58c-ac51-4696-9907-e4b3aa274f04

e7a1b9ed

update · 2d7acc53

tjc authored 18 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4439 ee4ac58c-ac51-4696-9907-e4b3aa274f04

2d7acc53

report unknown keys · eca2aab8

tjc authored 18 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4438 ee4ac58c-ac51-4696-9907-e4b3aa274f04

eca2aab8

include extra qualifiers and keys · fff4b2f9

tjc authored 18 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4437 ee4ac58c-ac51-4696-9907-e4b3aa274f04

fff4b2f9

Jun 01, 2006

more location checks · 5c63571b

tjc authored 18 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4364 ee4ac58c-ac51-4696-9907-e4b3aa274f04

5c63571b

use exons most current lastmodified · d1c1e00f

tjc authored 18 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4363 ee4ac58c-ac51-4696-9907-e4b3aa274f04

d1c1e00f

May 31, 2006

combine exons · baa7163c

tjc authored 18 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4362 ee4ac58c-ac51-4696-9907-e4b3aa274f04

baa7163c

tidy · b3b750c2

tjc authored 18 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4361 ee4ac58c-ac51-4696-9907-e4b3aa274f04

b3b750c2

changes for gene hierarchy · 6996f0b3

tjc authored 18 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4360 ee4ac58c-ac51-4696-9907-e4b3aa274f04

6996f0b3

gene editor · ddd348a9

tjc authored 18 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4359 ee4ac58c-ac51-4696-9907-e4b3aa274f04

ddd348a9

May 22, 2006

fixes to use uniquename · 56a5e8be

tjc authored 18 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@4356 ee4ac58c-ac51-4696-9907-e4b3aa274f04

56a5e8be

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