Commits · c836a42a286dc5c189a0d2a68e1f0984387bcb63 · violethaze74 / Artemis

Jan 06, 2005

megablast · c836a42a

tjc authored 20 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2179 ee4ac58c-ac51-4696-9907-e4b3aa274f04

c836a42a

set initial size of this vector · 6766cb08

tjc authored 20 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2178 ee4ac58c-ac51-4696-9907-e4b3aa274f04

6766cb08

set initial size of this vector · 984b2ced

tjc authored 20 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2177 ee4ac58c-ac51-4696-9907-e4b3aa274f04

984b2ced

extend QualifierVector · 8fc23ed1

tjc authored 20 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2176 ee4ac58c-ac51-4696-9907-e4b3aa274f04

8fc23ed1

change getStrings tokenising string · a6e949a6

tjc authored 20 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2175 ee4ac58c-ac51-4696-9907-e4b3aa274f04

a6e949a6

Jan 05, 2005

beta release · e68cef98

tjc authored 20 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2174 ee4ac58c-ac51-4696-9907-e4b3aa274f04

e68cef98

Jan 04, 2005

v4 · 00bad5bf

tjc authored 20 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2167 ee4ac58c-ac51-4696-9907-e4b3aa274f04

00bad5bf

v7 · 58ccb6bb

tjc authored 20 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2166 ee4ac58c-ac51-4696-9907-e4b3aa274f04

58ccb6bb

fix indexOfQualifierWithName() · 152a594f

tjc authored 20 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2164 ee4ac58c-ac51-4696-9907-e4b3aa274f04

152a594f

Dec 24, 2004

optimise · 95033a7f

tjc authored 20 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2163 ee4ac58c-ac51-4696-9907-e4b3aa274f04

95033a7f

optimise · b8bb9a4c

tjc authored 20 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2162 ee4ac58c-ac51-4696-9907-e4b3aa274f04

b8bb9a4c

catch null selection of matches · 4d1658ab

tjc authored 20 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2161 ee4ac58c-ac51-4696-9907-e4b3aa274f04

4d1658ab

leave alternative method using Strings in getStopCodons commented out · 82599c91

tjc authored 20 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2160 ee4ac58c-ac51-4696-9907-e4b3aa274f04

82599c91

tidy · 9e772c73

tjc authored 20 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2159 ee4ac58c-ac51-4696-9907-e4b3aa274f04

9e772c73

Dec 23, 2004

speed up for drawing stop codons · 20dc5418

tjc authored 20 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2158 ee4ac58c-ac51-4696-9907-e4b3aa274f04

20dc5418

speed up · bac273a1

tjc authored 20 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2157 ee4ac58c-ac51-4696-9907-e4b3aa274f04

bac273a1

use char[] for getting at seq stop codons · 066a8f60

tjc authored 20 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2156 ee4ac58c-ac51-4696-9907-e4b3aa274f04

066a8f60

Dec 22, 2004

use char array in isStopCodon · 5452be80

tjc authored 20 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2155 ee4ac58c-ac51-4696-9907-e4b3aa274f04

5452be80

calc seq length out of loop in getStopCodons · d1ac535a

tjc authored 20 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2154 ee4ac58c-ac51-4696-9907-e4b3aa274f04

d1ac535a

remember the feature colour · 046dc5f6

tjc authored 20 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2153 ee4ac58c-ac51-4696-9907-e4b3aa274f04

046dc5f6

draw amino acid as a string · 8b3ef07f

tjc authored 20 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2152 ee4ac58c-ac51-4696-9907-e4b3aa274f04

8b3ef07f

Dec 21, 2004

fixes to add note · 0ab3f3db

tjc authored 20 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2151 ee4ac58c-ac51-4696-9907-e4b3aa274f04

0ab3f3db

create feature popup only once · 8424dfd3

tjc authored 20 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2150 ee4ac58c-ac51-4696-9907-e4b3aa274f04

8424dfd3

tidy · 6ddd7c6b

tjc authored 20 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2149 ee4ac58c-ac51-4696-9907-e4b3aa274f04

6ddd7c6b

AminoAcidSequence.setGeneCode when changes in menus & not in constructor · fa450610

tjc authored 20 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2148 ee4ac58c-ac51-4696-9907-e4b3aa274f04

fa450610

AminoAcidSequence.setGeneCode when changes in menus · cc7703c2

tjc authored 20 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2147 ee4ac58c-ac51-4696-9907-e4b3aa274f04

cc7703c2

tidy · 51959448

tjc authored 20 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2146 ee4ac58c-ac51-4696-9907-e4b3aa274f04

51959448

remove HashMap reference · 259a09fd

tjc authored 20 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2145 ee4ac58c-ac51-4696-9907-e4b3aa274f04

259a09fd

Dec 20, 2004

optimise and format · 4d74c658

tjc authored 20 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2144 ee4ac58c-ac51-4696-9907-e4b3aa274f04

4d74c658

Dec 17, 2004

remove global JMenuItems · e0c3c9f6

tjc authored 20 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2142 ee4ac58c-ac51-4696-9907-e4b3aa274f04

e0c3c9f6

remove JMenuItem global vars and make function private where possible · 497f586a

tjc authored 20 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2141 ee4ac58c-ac51-4696-9907-e4b3aa274f04

497f586a

remove global JMenuItems · 697cfd95

tjc authored 20 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2140 ee4ac58c-ac51-4696-9907-e4b3aa274f04

697cfd95

Dec 16, 2004

target source flags · 9df70daf

tjc authored 20 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2139 ee4ac58c-ac51-4696-9907-e4b3aa274f04

9df70daf

set style to raw as default is now html · 3ad12166

tjc authored 20 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2137 ee4ac58c-ac51-4696-9907-e4b3aa274f04

3ad12166

Dec 15, 2004

tidy · 55c1fba6

tjc authored 20 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2136 ee4ac58c-ac51-4696-9907-e4b3aa274f04

55c1fba6

deal with long pathnames · dc3388c5

tjc authored 20 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2135 ee4ac58c-ac51-4696-9907-e4b3aa274f04

dc3388c5

Dec 14, 2004

format · eaef5c2f

tjc authored 20 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2134 ee4ac58c-ac51-4696-9907-e4b3aa274f04

eaef5c2f

remove redundant variable · c584b54e

tjc authored 20 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2133 ee4ac58c-ac51-4696-9907-e4b3aa274f04

c584b54e

remove packme() · e0b6adfb

tjc authored 20 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2132 ee4ac58c-ac51-4696-9907-e4b3aa274f04

e0b6adfb

format · dc1add71

tjc authored 20 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@2131 ee4ac58c-ac51-4696-9907-e4b3aa274f04

dc1add71

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