Commits · fdaa21b474e1aec01efa49c1f7f42f5a8b5f16c5 · violethaze74 / Artemis

Apr 03, 2009

changes for updating feature residues in the database · fdaa21b4

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10380 ee4ac58c-ac51-4696-9907-e4b3aa274f04

fdaa21b4

Mar 24, 2009

reduce max number of connections in pool · 8f4dc6e6

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10268 ee4ac58c-ac51-4696-9907-e4b3aa274f04

8f4dc6e6

Feb 04, 2009

changes to allow for FeatureCvTerm.rank column to be absent · 5b1b4cad

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9753 ee4ac58c-ac51-4696-9907-e4b3aa274f04

5b1b4cad

remove organism join for statements mapping to map-feature-with-residues-result · 8d1ba6d8

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9752 ee4ac58c-ac51-4696-9907-e4b3aa274f04

8d1ba6d8

Dec 10, 2008

add OrganismProp · a14d27d9

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9582 ee4ac58c-ac51-4696-9907-e4b3aa274f04

a14d27d9

Nov 25, 2008

fix for similarity · d7e3ce0c

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9431 ee4ac58c-ac51-4696-9907-e4b3aa274f04

d7e3ce0c

Nov 21, 2008

remove join that is not needed from getTopLevelOrganisms · 71f66f5d

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9412 ee4ac58c-ac51-4696-9907-e4b3aa274f04

71f66f5d

Nov 17, 2008

add getTopLevelFeatures · 69f13ce0

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9370 ee4ac58c-ac51-4696-9907-e4b3aa274f04

69f13ce0

add getTopLevelOrganisms and getOrganismsContainingSrcFeatures · 67ac9dab

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9369 ee4ac58c-ac51-4696-9907-e4b3aa274f04

67ac9dab

update order of xml · 6e88e163

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9368 ee4ac58c-ac51-4696-9907-e4b3aa274f04

6e88e163

Oct 15, 2008

remover order from getFeature · 02b35232

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9034 ee4ac58c-ac51-4696-9907-e4b3aa274f04

02b35232

Oct 14, 2008

speed up getFeature · c038d8ef

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@9006 ee4ac58c-ac51-4696-9907-e4b3aa274f04

c038d8ef

Sep 25, 2008

optimise getResidueFeatures · f3699eb3

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@8894 ee4ac58c-ac51-4696-9907-e4b3aa274f04

f3699eb3

change getLazySimilarityMatches and getLazySimilarityMatchesByFeatureIds to... · 495eb12f

tjc authored 16 years ago

change getLazySimilarityMatches and getLazySimilarityMatchesByFeatureIds to speed up loading similarity and polypeptide domains that are featureLoc'ed


git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@8882 ee4ac58c-ac51-4696-9907-e4b3aa274f04

495eb12f

add getFeatureLocsByListOfIds · 04b9ba65

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@8881 ee4ac58c-ac51-4696-9907-e4b3aa274f04

04b9ba65

Sep 24, 2008

example DBCP transactionManager · 57423163

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@8879 ee4ac58c-ac51-4696-9907-e4b3aa274f04

57423163

Sep 23, 2008

use getLazyFeatureNoResiduesById · 48d0d7bc

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@8876 ee4ac58c-ac51-4696-9907-e4b3aa274f04

48d0d7bc

add getLazyFeatureNoResiduesById · 844eff4d

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@8873 ee4ac58c-ac51-4696-9907-e4b3aa274f04

844eff4d

Sep 22, 2008

fix getFeaturePubsByFeature · 07d93fcd

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@8871 ee4ac58c-ac51-4696-9907-e4b3aa274f04

07d93fcd

optimise · 0cf1d564

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@8870 ee4ac58c-ac51-4696-9907-e4b3aa274f04

0cf1d564

Sep 19, 2008

change to use feature.name as the primary name · be6734f4

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@8863 ee4ac58c-ac51-4696-9907-e4b3aa274f04

be6734f4

Sep 15, 2008

fix getFeatureCvTermsByFeature() · 728b6836

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@8818 ee4ac58c-ac51-4696-9907-e4b3aa274f04

728b6836

Sep 08, 2008

look for supercontigs · 92513a4c

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@8743 ee4ac58c-ac51-4696-9907-e4b3aa274f04

92513a4c

Aug 07, 2008

add ping query to SimpleDataSource · bc526837

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@8485 ee4ac58c-ac51-4696-9907-e4b3aa274f04

bc526837

Aug 05, 2008

use Pool.TimeToWait · ad7faa05

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@8463 ee4ac58c-ac51-4696-9907-e4b3aa274f04

ad7faa05

Aug 01, 2008

retrieve the features that are featureloced to feaure · 140473d1

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@8424 ee4ac58c-ac51-4696-9907-e4b3aa274f04

140473d1

Jul 21, 2008

ignore thmm · 2f06424b

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@8305 ee4ac58c-ac51-4696-9907-e4b3aa274f04

2f06424b

Jun 03, 2008

use feature.is_obsolete · 7a3f0d75

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7667 ee4ac58c-ac51-4696-9907-e4b3aa274f04

7a3f0d75

May 15, 2008

add contigs to search · f93b35b5

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7431 ee4ac58c-ac51-4696-9907-e4b3aa274f04

f93b35b5

Apr 22, 2008

add getFeatureSynonymsByFeatureIds · 55e5a388

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7269 ee4ac58c-ac51-4696-9907-e4b3aa274f04

55e5a388

add getFeaturePubsByFeature · 350eaf89

tjc authored 16 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7268 ee4ac58c-ac51-4696-9907-e4b3aa274f04

350eaf89

for map-feture resultMap add lazy loading of featureSynonyms, featureDbXRefs,... · e0684eff

tjc authored 16 years ago

for map-feture resultMap add lazy loading of featureSynonyms, featureDbXRefs, feaureCvTerms & featurePubs


git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7267 ee4ac58c-ac51-4696-9907-e4b3aa274f04

e0684eff

Mar 13, 2008

speed up · e8872785

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7227 ee4ac58c-ac51-4696-9907-e4b3aa274f04

e8872785

Mar 07, 2008

increase Pool.MaximumWait time · 563aa30d

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7214 ee4ac58c-ac51-4696-9907-e4b3aa274f04

563aa30d

speed up getFeature and getResidueFeatures · 5fc4643c

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7213 ee4ac58c-ac51-4696-9907-e4b3aa274f04

5fc4643c

speed up getFeatureDbXRefsBySrcFeature · e1395d07

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7212 ee4ac58c-ac51-4696-9907-e4b3aa274f04

e1395d07

update · eb51d6e7

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7211 ee4ac58c-ac51-4696-9907-e4b3aa274f04

eb51d6e7

add insertAnalysis · 48c9009d

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7210 ee4ac58c-ac51-4696-9907-e4b3aa274f04

48c9009d

Feb 21, 2008

updates for lazy loading FeatureCvTerms · a7f7f6e9

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7159 ee4ac58c-ac51-4696-9907-e4b3aa274f04

a7f7f6e9

Feb 19, 2008

get primary dbxref in getFeature · 280383c3

tjc authored 17 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7156 ee4ac58c-ac51-4696-9907-e4b3aa274f04

280383c3

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