Commits · ff75a69db28cf85455c71080bb7eaf8040de26fa · violethaze74 / Artemis

Jan 29, 2014
- rework GFF3 export code · e4b54525
  Sascha Steinbiss authored 11 years ago
  
  e4b54525
Jan 06, 2014
- specify CV feature_property when looking up cvterm for feature prop · b79a6f02
  tcarver authored 11 years ago
  
  b79a6f02
Sep 04, 2013
- add option for defining alternative products in the cases where there · 3f40cfc2
  tcarver authored 11 years ago
  
  are multiple products and one is the the recomended product
  3f40cfc2
Aug 15, 2013
- change isFminPartial / isFmaxPartial to Start_range / End_range · 4c60c5e2
  tcarver authored 11 years ago
  
  4c60c5e2
Jul 31, 2013
- update · 528e90cf
  tcarver authored 11 years ago
  
  528e90cf
Jul 25, 2013
- Added note about the prefixing of URIs · 8df8559f
  Eric Rasche authored 11 years ago
  
  8df8559f
- Refactored DLP to handle URIs a little better · 31a3ef86
  Eric Rasche authored 11 years ago
  
  31a3ef86
Jul 24, 2013
- Fixed issue of re-prefixing url in DbSqlConfig · 418ccd90
  Eric Rasche authored 11 years ago
  
  418ccd90
- Adding in support for SSL. Also refactoring DB URL string parsing into a single class · bbcb95d2
  Eric Rasche authored 11 years ago
  
  bbcb95d2
Jul 12, 2013
- use generics and tidy · 34dfcd50
  tcarver authored 11 years ago
  
  34dfcd50
Jul 11, 2013
- avoid duplicating a history qualifier · c3c8aa2e
  tcarver authored 11 years ago
  
  c3c8aa2e
Jun 18, 2013
- automatically add history qualifier with a cvterm change · 8b2509bc
  tcarver authored 11 years ago
  
  8b2509bc
May 30, 2013
- decode feature_cvtermprop values when checking against the database · b0bd6cdf
  tcarver authored 11 years ago
  
  b0bd6cdf
Jan 16, 2013
- catch nullpointer · 9b51cc56
  tcarver authored 12 years ago
  
  9b51cc56
Nov 01, 2012
- fix for setting fmin fmax partial so that this is not set for internal · 8b62506d
  tcarver authored 12 years ago
  
  exons
  8b62506d
Sep 17, 2012
- tidy · 255fd786
  tcarver authored 12 years ago
  
  255fd786
Oct 03, 2011
- fix for adding controlled curation terms from different cv's · 3f6b6a8e
  tcarver authored 13 years ago
  
  3f6b6a8e
Mar 23, 2011

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15795 ee4ac58c-ac51-4696-9907-e4b3aa274f04

5adfcdf1

Jun 23, 2010

fix for creating features from graph peaks · 56b5b7dc

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@14102 ee4ac58c-ac51-4696-9907-e4b3aa274f04

56b5b7dc

May 25, 2010

catch null mapping · c8138af3

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13900 ee4ac58c-ac51-4696-9907-e4b3aa274f04

c8138af3

May 04, 2010

fix write out clusters · a4ec0848

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13786 ee4ac58c-ac51-4696-9907-e4b3aa274f04

a4ec0848

Apr 20, 2010

speed up loading gene names for ortholog features · 65b551d6

tjc authored 14 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13706 ee4ac58c-ac51-4696-9907-e4b3aa274f04

65b551d6

Mar 23, 2010

do not set segment Name when inserting segments · dbb9cadd

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13547 ee4ac58c-ac51-4696-9907-e4b3aa274f04

dbb9cadd

Mar 19, 2010

fix for history qualifier · 8b4a94b1

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13535 ee4ac58c-ac51-4696-9907-e4b3aa274f04

8b4a94b1

Mar 16, 2010

changes to handle semi-colon separators in the qualifier field of a history term · 818cb811

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13484 ee4ac58c-ac51-4696-9907-e4b3aa274f04

818cb811

Mar 08, 2010

add deletePolypetideDomains() to be called on deletion of polypeptide features · 987e8b91

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13410 ee4ac58c-ac51-4696-9907-e4b3aa274f04

987e8b91

fix for getting database document · e107d732

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13409 ee4ac58c-ac51-4696-9907-e4b3aa274f04

e107d732

Feb 26, 2010

fix for propagating id · 2d4eba01

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13348 ee4ac58c-ac51-4696-9907-e4b3aa274f04

2d4eba01

Feb 25, 2010
- use history qualifiers rather than private qualifiers and store them as feature_cvterms · 314aaa81
  tjc authored 15 years ago
  
  git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13338 ee4ac58c-ac51-4696-9907-e4b3aa274f04
  314aaa81
Feb 24, 2010

add option of adding private qualifiers as a feature_cvterm · 88d9b6a4

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13326 ee4ac58c-ac51-4696-9907-e4b3aa274f04

88d9b6a4

Feb 04, 2010

set values to null for featureprops with no values · 2b353476

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13179 ee4ac58c-ac51-4696-9907-e4b3aa274f04

2b353476

Feb 02, 2010

when changing groups of featurelocs check they are not partial · d48ae6f2

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13143 ee4ac58c-ac51-4696-9907-e4b3aa274f04

d48ae6f2

Jan 29, 2010

trim spaces from literature qualifiers · 160215fe

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@13133 ee4ac58c-ac51-4696-9907-e4b3aa274f04

160215fe

Nov 06, 2009

change to logger information · 87a95e40

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12287 ee4ac58c-ac51-4696-9907-e4b3aa274f04

87a95e40

Oct 16, 2009

report problems with getting gene names · 81c50d06

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12098 ee4ac58c-ac51-4696-9907-e4b3aa274f04

81c50d06

Oct 14, 2009

use GoBox.getGOCvTerm() when adding GO terms in getFeatureCvTerm() · 0acc3364

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@12068 ee4ac58c-ac51-4696-9907-e4b3aa274f04

0acc3364

Sep 21, 2009

fix to load dbxrefs for polypeptide domains · a1a55835

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@11836 ee4ac58c-ac51-4696-9907-e4b3aa274f04

a1a55835

Sep 14, 2009

fix lazy for loading · 480ae065

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@11765 ee4ac58c-ac51-4696-9907-e4b3aa274f04

480ae065

Sep 01, 2009

changes to handle ortho/paralogs that do not have a match feature but just... · d19c3f1b

tjc authored 15 years ago

changes to handle ortho/paralogs that do not have a match feature but just have a feature_relationship link


git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@11678 ee4ac58c-ac51-4696-9907-e4b3aa274f04

d19c3f1b

add deleteFeatureRelationship · 77880591

tjc authored 15 years ago

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@11676 ee4ac58c-ac51-4696-9907-e4b3aa274f04

77880591

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