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Created with Raphaël 2.2.020Nov10Oct9Sep7Feb64Dec28Nov21191325Oct17111098Aug765122May15134Apr14Mar28Feb26865428Jan242221181711108713Dec1110528Nov2726232119161312629Oct161511984324Sep11Jun729May3Apr29Mar28272623212096213Feb12965231Jan292625823Oct9225Sep27Jan23Nov2212Sep20Apr28Jan9Nov727Oct26242226Aug1411Jun1022May2113627Jan234Nov323Oct4Sep19Aug1815149Jul25Jun15May986110Apr9874331Mar2827252421191413121119Feb18171312654331Jan302924222017141310613Dec105427Nov262120151275430Oct24231615141187123Sep2019181716131210964330Aug27222120191615Merge branch 'dependabot/maven/junit-junit-4.13.1' into 'master'mastermasterBump junit from 4.12 to 4.13.1Merge pull request #314 from sanger-pathogens/fixlinkscorrect links to user manualsMerge pull request #304 from mr-c/samreaderImplement new htsjdk APIUpdated download links for Artemis release 18.1.0gh-pagesgh-pagesUpdated CHANGELOGv18.1.0v18.1.0Merge pull request #300 from kpepper/perf_fixesUpdated in line with test data changesBug fixes for indexed gff handlingChanged to load database mappings up frontAdded NullPointer catch for missing IDCode tidy-upTest data rejigAdded GeneUtils entryAdded low_complexity_region and tandem_repeat feature keysMerge pull request #298 from sanger-pathogens/change_script_exit_codesChanged exit codes for art and dnaplotter help, to be consistent with PR #297 and issue #296.Merge pull request #297 from Darkless012/patch-1Change exit code to 0 on running act -helpUpdated release download badge version numberCode tidy ups and unit testsRefactored LineGroupCacheChanged max number of lines that can be displayed in the log window so that it doesn't hangMinor change to stop validation aborting when a NullPointer is encounteredAdded additional file suffixes to the feature_file_suffixes and sequence_file_suffixes propertiesMerge latest master branch changes into perf_fixesMerge pull request #5 from sanger-pathogens/masterFixed removal of redundant delimitersUpdated download links for release v18.0.3Updated for release v18.0.3v18.0.3v18.0.3Merge pull request #294 from sanger-pathogens/docker_branchJava and docker related updatesRebuilt Mac appbundler jar from latest GitHub code to fix Mojave issue whereby a Java version error would be displayed when trying to open an appBumped version number to 18.0.3Updated usage sectionUpdated Java adviceClasspath change to docker fileMinor changes