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Created with Raphaël 2.2.02Feb31Jan292625823Oct9225Sep27Jan23Nov2212Sep20Apr28Jan9Nov727Oct26242226Aug1411Jun1022May2113627Jan234Nov323Oct4Sep19Aug1815149Jul25Jun15May986110Apr9874331Mar2827252421191413121119Feb18171312654331Jan302924222017141310613Dec105427Nov262120151275430Oct24231615141187123Sep2019181716131210964330Aug272221201916151413129631Jul3025241812111083227Jun26252421191817121130May287330Apr292624221918121095427Mar21201914127428Feb262522151413121187654131Jan3028242118171611103219Dec17111028NovMinor script changes. Property name changeremoved a testtravis yml changetravis yml changetravis yml changetravis yml changetravis yml changeChanged travis yml file to only run the unit tests on the oracle 8 buildUpdated change log and log4j.propertiesFixed negative array index exception in BamView (does not affect Artemis)Changed EBI DbFetch code so that the function works again. Added latest picard jar. More work on CRAM file loading. Updated/added scripts for application start. Small tweaks to makefile/ant. Removed gff2embl and gene_builder. Recreated evosuite tests.Fixed deprecated feature warnings for Java 1.8Addition of CRAM file handling. Update of various jars. Addition of more unit tests.Initial BAM View changes to fix selection issues, zooming into secondary alignments, erroneous collapsing of reads with same start/end position and display of SNPs - related to RT ticket 597652Changes to new unit testsFirst commit of unit test changes. Added more manual unit tests, an EvoSuite regression set and coverage reporting. Moved Java version for Artemis to Java 8. Ripped out redundant Corba code.New unit tests added. Some todos still to be sorted outMerge pull request #230 from vaofford/artemis_v16.0.18update scratch108 to scratch118 - v16.0.18update urlsinc artemis versionv16.0.17v16.0.17Update AUTHORSMerge pull request #226 from aslett1/masterUpdated NCBI blast URL to httpsMerge pull request #225 from satta/masterbump copyright yearversion bumpMerge pull request #221 from satta/tcdb_newadd TCDB as databaseMerge pull request #220 from satta/java8-sortfix method name clash for List.sort() in Java 8Merge pull request #218 from afif-elghraoui/masterMerge pull request #219 from satta/fix_travisswitch to older EMBOSS versionoverride abstract method close() in CRAMReferenceSequenceFileMerge pull request #212 from satta/aliasMerge pull request #217 from aslett1/masterAdded Kim RutherfordMerge pull request #215 from sanger-pathogens/BT5_travisBuild using Ant under openjdk7BT5_travisBT5_travis