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Created with Raphaël 2.2.013Sep1210964330Aug272221201916151413129631Jul3025241812111083227Jun26252421191817121130May287330Apr292624221918121095427Mar21201914127428Feb262522151413121187654131Jan3028242118171611103219Dec17111028Nov26212019151312862130Oct2926252423221828Sep24211917141211731Aug302928201715149873130Jul272625242019181716121110543228Jun26252221201918151312116130May2928252423211817163230Apr27add getCDSFeatureByIdPrefix()use Utils.getEntryGroup()add getEntryGroup()use assertEqualsupdateupdate junitmultiple sequence GFFfeature offset in GFF with multiple sequencesMerge pull request #156 from tcarver/masterupdatefix for adjusting coordinate offset in multiple sequence GFFadd fasta_record to extra_keys_gffMerge pull request #155 from tcarver/masterupdatefix for when FeatureDisplay is not usedMerge pull request #154 from tcarver/masterupdate versionMerge pull request #153 from tcarver/mastervalidation testsadd GFF fileschange visibility of functions and fix for non coding transcripts in GFFadd option for defining alternative products in the cases where therefix for GFF on the command linecheck to ensure not recursively trying to read from the same fileMerge pull request #152 from tcarver/masterfix for blank lines in GenBank sequenceremove commented out functionsimplify to one constructorchange visibility of orig_qualifier_texttidyMerge pull request #151 from tcarver/masterupdatetidyupdate for genericsadd check for ID prefix in gene modelsfix for when there is no default entrytidy and implement genericsfix for genericstidyremove LineGroupVector