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Created with Raphaël 2.2.025Jul241812111083227Jun26252421191817121130May287330Apr292624221918121095427Mar21201914127428Feb262522151413121187654131Jan3028242118171611103219Dec17111028Nov26212019151312862130Oct2926252423221828Sep24211917141211731Aug302928201715149873130Jul272625242019181716121110543228Jun26252221201918151312116130May2928252423211817163230Apr27252423201613121110543230Mar29282726212019161514Fixed attribution on my fileReturning logging profile to non-debug modeAdded last file, the DatabaseLocationParser itselfAdded note about the prefixing of URIsRefactored DLP to handle URIs a little betteradd BAM labels to column headersadd save listener option and make writeToFile() staticMerge remote-tracking branch 'upstream/master'changes for farm3Fixed issue of re-prefixing url in DbSqlConfigAdding in support for SSL. Also refactoring DB URL string parsing into a single classinterface for user defined qualifiersopen GeneBuilderFrame using SwingUtilitiesupdateuse generics and tidyavoid duplicating a history qualifierMerge pull request #145 from tcarver/masteradd getEntrySource()add command line interface to validate file or chado entriesadd GO validationadd GO validationupdate to version 1.94allow graph lines to have a line size of zero to be able to hide themuse generics and tidyremove public variable versionremove EntryEditVectortidyuse genericsuse static reference to Options.readWritePossible() for save to listtidytidyfixes for genericsfix for null tooltip textchange visibility of evidenceCodesfix for copying indexed gff featuresupdateupdate importsrestrict visibility of some functionsupdateupdate code