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Created with Raphaël 2.2.08Apr763131Mar272625242320191817161365427Feb26252423191817161210976543227Jan2322201915141398716Dec1511109432128Nov2726252421201917161413121110765331Oct3028242322201817161514131098762130Sep2524232219181615121110843220Aug1918151413121187654131Jul2928242221181716151110984230Jun272623201817161211104329May22211615141312862125Apr223126Mar2519131276527Feb262522211918158765430Jan29updateschange access for lookseqshow lookseq panelupdateallow user to be able to set min/max valuesallow user to be able to set min/max valuesfix for boundary check for pseudo geneschanges for updating residues columnadd getTranscriptFeatureFromName()add to sequence_update_features listpanel for showing looksequpdate residues column when featureloc changes for features in the sequence_update_features list in the options fileadd utility methods for getting and updating residues for those features in the sequence_update_features list in the options filewhen inserting features add residues to those in the sequence_update_features list in the option filechanges for updating feature residues in the databaseadd sequence_update_featuresfix for displaying codon usage plots-Dnopropmt introduced so the user can turn off prompting of problem keys/qualifiersupdatechanges to allow writing out EMBL submissionchanges to ReadAndWriteEntry.writeDatabaseEntryToFile()add private and curation to UTRsuse splitpanedisplay name as a tooltipupdateadd panther hyperlinkfixes for contigRearrange()updateuse DatabaseDocument.reset() to establish a new connectionadd reset()change to fix boundaries for polypep to not include UTRsset hyperlinks to Amigoadd GO hyperlinkchange to transferAnnotation()provide user with a summary of the transferchange getGeneNameList() to get cluster orthologs if manual orthologs are not availableTATadd teststests for transferring annotationfix formats