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Created with Raphaël 2.2.024Sep11Jun729May3Apr29Mar28272623212096213Feb12965231Jan292625823Oct9225Sep27Jan23Nov2212Sep20Apr28Jan9Nov727Oct26242226Aug1411Jun1022May2113627Jan234Nov323Oct4Sep19Aug1815149Jul25Jun15May986110Apr9874331Mar2827252421191413121119Feb18171312654331Jan302924222017141310613Dec105427Nov262120151275430Oct24231615141187123Sep2019181716131210964330Aug272221201916151413129631Jul3025241812111083227Jun26252421191817121130May287330Apr292624221918121095427Mar21201914127428Feb26252215Updated picard jar to 2.18.14, which includes fixes for htsdjk github issues 1065 and 1127Removed redundant old j2ssh-artemis-plugin.jarRemoved redundant commons logging jarRecreated Evosuite tests. Updated README from master branch. Various pom changes including removing the ssh plugin jar. Removed latex files from docs directory as these are no superceded by docx manuals that can be exported to html/pdfMerge pull request #265 from kpepper/gh-pagesChanged user guide urls to point at sanger-pathogens main repoAdded user guide pdf links to pagesAdded pdf manualsAdded ACT manual pagesFix artemis manual file nameFix artemis manual directory pathFirst test of adding Artemis manual HTML pagesMerge pull request #262 from sanger-pathogens/github_issue_261_fixeb-apollo-gener…eb-apollo-generate_namesFixed GitHub issue 261 - escaped line feed left in manifest when building on linux. Also changed name of dnaplotter jar to be consistent and because linux is case sensitive so it should exactly match the name in the scriptAdding a few evosuite testsMerge pull request #260 from sanger-pathogens/bam_caching_bug_fixFix for RT issue 624271Added more FAQ sections to all READMEs as part of Artemis web pages tidy-up. Added poster reference on Artemis README.Merge pull request #259 from sanger-pathogens/gh-pages-updatesVarious updates to github pages, inc removal of sourceforge references.Merge pull request #258 from ssjunnebo/589110_readmebadges on separate rowsAdd publication badgesMerge pull request #257 from ssjunnebo/gh-pagesRemove windows download noteMerge pull request #256 from ssjunnebo/gh-pagesupdate downloadsMerge pull request #255 from ssjunnebo/gh-pagesshow facicon on sub pagesshow facicon on sub pagesMerge pull request #254 from ssjunnebo/gh-pagesremove downloads from artemis pageMerge pull request #253 from ssjunnebo/gh-pagesadd faviconMerge pull request #252 from ssjunnebo/gh-pagesupdate ftp downloadsMerge pull request #251 from ssjunnebo/gh-pagesfix linksMerge pull request #250 from ssjunnebo/gh-pageschange header name