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Created with Raphaël 2.2.026Nov232119161312629Oct161511984324Sep11Jun729May3Apr29Mar28272623212096213Feb12965231Jan292625823Oct9225Sep27Jan23Nov2212Sep20Apr28Jan9Nov727Oct26242226Aug1411Jun1022May2113627Jan234Nov323Oct4Sep19Aug1815149Jul25Jun15May986110Apr9874331Mar2827252421191413121119Feb18171312654331Jan302924222017141310613Dec105427Nov262120151275430Oct24231615141187123Sep2019181716131210964330Aug272221201916151413129631Jul3025241812111083227Jun26252421191817121130May287330Apr2926Added the ability to invoke an EBI InterPro sequence searchRemoved fasta36/fastx/Jalview/smart run ability, as these programs will no longer be supportedUpdated code references to Java 8Added recent changesAdded additional classUpdated for Java 9+Removed ability to run remote blast searches etc over SSH. This code is very old and will be iteratively retiredUpdated etc/run_ scripts to use later program versions, e.g. fasta36 and blast+. Removed the .sanger and .linux run scripts as these obviously have not been used for some time and were very out of datePorted local blast db setup script from Sanger general repoBuild process updates, mostly for MacFix for RT ticket #642944. ACT can now handle NCBI Blast web site comparison files. This is a workaround for the fact that DoubleACT and WebACT are currently downRemoved deprecated call and unused importsFlattened the lib directory structureChanges to get Pfam hyperlinks and Pfam/Rfam sequence searching working (also see RT Ticket 420623)Added mod for RT ticket #642350 - new evidence codesAdded fix for Mac Java 9 JDK-8181568 issueFixed compiler warningsFixed incorrect error messages displayed when no feature has been selected for a pfam/rfam searchJava 9 and Mac enforced changesAdded Mac app bundler jarVarious evosuite test mods in light of Java 9 code changes.Removed out of date email addressesMoved images folder under src resourcesRemoved INSTALL doc as instructions should be available on web siteCreated some basic Chado unit testsChanged method visibility in order to create a unit test for itFixed bug in getFeatureQuery - query failed in Postgres 10 testingRemoved Info.plist as not needed nowAdded some extra loggingMerge pull request #268 from kpepper/gh-pagesCommitted Artemis and ACT word master docs from which HTML and PDF manuals can be exported.Removed additional tests for the moment as they won't fit inside the Travis 50 min build windowAdded test timeoutRemoved unstable testsAnother Travis testing changeReadme updatesChanged version and added Mockito for unit testsFixed Eclipse classpath - removed non-maven repo jarsFix for RT ticket 400288 - Go Term Warnings in Artemis.Merged branch build-process-upgrade-branch to build-process-upgrade-merge