FeatureDbXRef.xml

<?xml version="1.0" encoding="UTF-8" ?> 
 
<!DOCTYPE sqlMap 
    PUBLIC "-//ibatis.apache.org//DTD SQL Map 2.0//EN" 
    "http://ibatis.apache.org/dtd/sql-map-2.dtd"> 
 

<sqlMap namespace="FeatureDbXRef"> 
 
  <typeAlias alias="FeatureDbXRef"
        type="org.gmod.schema.sequence.FeatureDbXRef"/>
        
  <resultMap id="map-feature-dbxref" 
               class="FeatureDbXRef">
    <result property="feature.featureId"  column="feature_id"/>
    <result property="dbXRef.db.name"     column="name"/>
    <result property="dbXRef.accession"   column="accession"/>
    <result property="dbXRef.version"     column="version"/>
    <result property="dbXRef.description" column="description"/>
    <result property="current"            column="is_current" nullValue="false"/>
  </resultMap>
  
  <resultMap id="map-feature-of-feature-dbxref" 
               class="Feature" groupBy="featureId">
    <result property="featureId" column="feature_id"/>
    <result property="featureDbXRefs" resultMap="FeatureDbXRef.map-feature-dbxref" />
  </resultMap>
	
  <select id="getFeatureDbXRef" 
          parameterClass="org.gmod.schema.sequence.Feature"
          resultMap="map-feature-dbxref">
   	SELECT db.name, dbx.accession, dbx.version, dbx.description,
   	       dbx_f.feature_id, dbx_f.is_current
 	FROM feature_dbxref dbx_f 
        LEFT JOIN dbxref dbx ON dbx.dbxref_id=dbx_f.dbxref_id
        LEFT JOIN db ON db.db_id=dbx.db_id 
        <!--LEFT JOIN feature f ON dbx_f.feature_id=f.feature_id-->
        <isNotNull property="uniqueName"> 
          WHERE dbx_f.feature_id=(SELECT feature_id FROM feature where uniquename=#uniqueName#)
        </isNotNull>
        <isGreaterThan property="featureId" compareValue="0">
          WHERE dbx_f.feature_id=$featureId$
        </isGreaterThan>
        ORDER BY feature_id
  </select>
	
  <select id="getFeatureDbXRefsByFeatureId" resultMap="map-feature-of-feature-dbxref">
   	SELECT db.name, dbx.accession, dbx.version, dbx.description,
   	       dbx_f.feature_id, dbx_f.is_current
 	FROM feature_dbxref dbx_f 
    LEFT JOIN dbxref dbx ON dbx.dbxref_id=dbx_f.dbxref_id
    LEFT JOIN db ON db.db_id=dbx.db_id 
    <!-- RIGHT JOIN feature f ON dbx_f.feature_id=f.feature_id -->
    WHERE dbx_f.feature_id IN <iterate open="(" close=")" conjunction=","> $[]$ </iterate>
    ORDER BY dbx_f.feature_id
  </select>

  <select id="getFeatureDbXRefsBySrcFeature" 
          parameterClass="org.gmod.schema.sequence.Feature"
          resultMap="map-feature-dbxref">
	SELECT db.name, dbx.accession, dbx.version, dbx.description, 
	       dbx_f.feature_id, dbx_f.is_current   
	FROM featureloc fl 
	RIGHT JOIN feature_dbxref dbx_f ON fl.feature_id = dbx_f.feature_id  
	LEFT JOIN dbxref dbx ON dbx.dbxref_id=dbx_f.dbxref_id     
	LEFT JOIN db ON db.db_id=dbx.db_id    
	WHERE srcfeature_id = $featureId$ 
	  <isGreaterThan property="featureLoc.fmin" compareValue="0" prepend="AND"> 
           <![CDATA[ fl.fmin > $featureLoc.fmin$ AND fl.fmax < $featureLoc.fmax$ ]]>
      </isGreaterThan>
	ORDER BY fl.feature_id, dbx.accession , db.name;
  </select>
  
  <!-- WRITE BACK -->
  <delete id="deleteFeatureDbXRef" parameterClass="FeatureDbXRef">
     DELETE FROM feature_dbxref 
     WHERE dbxref_id=
           (SELECT dbxref_id FROM dbxref WHERE accession=#dbXRef.accession#
            AND db_id=(SELECT db_id FROM db WHERE name=#dbXRef.db.name#))
     AND feature_id=
           (SELECT feature_id FROM feature WHERE uniquename=#feature.uniqueName#)
  </delete>
  
  <insert id="insertFeatureDbXRef" parameterClass="FeatureDbXRef">
    INSERT INTO feature_dbxref 
           (feature_id, dbxref_id, is_current)
           VALUES
           ($feature.featureId$, $dbXRef.dbXRefId$, $current$)
  </insert>
        
</sqlMap>