tidy

uk/ac/sanger/artemis/Feature.java

@@ -666,30 +666,11 @@ public class Feature
       return false;
   }
 
-  /**
-   *  Return true if and only if the key of this feature is CDS feature and
-   *  the feature has a /pseudo qualifier.
-   **/
-  public boolean isPseudoCDS() 
-  {
-    try 
-    {
-      if(getKey().equals("CDS") && getQualifierByName("pseudo") != null) 
-        return true;
-      else 
-        return false;
-    }
-    catch(InvalidRelationException e) 
-    {
-      throw new Error("internal error - unexpected exception: " + e);
-    }
-  }
-
   /**
    *  Return true if and only if the key of this feature is CDS feature and
    *  the feature has a /partial qualifier.
    **/
-  public boolean isPartialCDS() 
+  private boolean isPartialCDS() 
   {
     try 
     {
@@ -704,25 +685,6 @@ public class Feature
     }
   }
 
-  /**
-   *  Return true if and only if the key of this feature is an RNA feature or
-   *  is a CDS feature and doesn't have a /pseudo qualifier.
-   **/
-  public boolean isCodingFeature() 
-  {
-    if(getKey().equals("CDS") && ! isPseudoCDS() ||
-       getKey().equals("misc_RNA") ||
-       getKey().equals("mRNA") ||
-       getKey().equals("precursor_RNA") ||
-       getKey().equals("rRNA") ||
-       getKey().equals("scRNA") ||
-       getKey().equals("snRNA") ||
-       getKey().equals("tRNA")) 
-      return true;
-    else 
-      return false;
-  }
-
   /**
    *  Return the Location of this Feature.
    **/