new cluster changes

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@7158 ee4ac58c-ac51-4696-9907-e4b3aa274f04

lib/j2ssh/j2ssh.properties

@@ -5,19 +5,24 @@
 # 
 #
 # default login options
-port=2222
+port=2224
 host=localhost
 #
 #
 # Sanger options
 # 
-bsub=bsub -q normal -n 1 -R 'select[blast && mem > 500] rusage[mem=500]' 
+#bsub=bsub -q normal -n 1 -R 'select[blast && mem > 500] rusage[mem=500]' 
+bsub=bsub -q normal -n 1 -R 'select[mem > 500] rusage[mem=500]' 
 blastp=-I /nfs/pathsoft/prod/perl/flexi_blast.pl -p 
 blastx=-I /nfs/pathsoft/prod/perl/flexi_blast.pl -x
 tblastx=-I /nfs/pathsoft/prod/perl/flexi_blast.pl -tx
 blastn=-I /nfs/pathsoft/prod/perl/flexi_blast.pl
-fasta=-I /nfs/disk222/yeastpub/bio-soft/fasta/fasta33_t -B -S -q -b 100 -H -l /nfs/disk222/yeastpub/bio-soft/fasta/pubseqgbs
-fastx=-I /nfs/disk222/yeastpub/bio-soft/fasta/fastx33_t -B -S -q -b 40 -H -l /nfs/disk222/yeastpub/bio-soft/fasta/pubseqgbs
+
+#fasta=-I /nfs/disk222/yeastpub/bio-soft/fasta/fasta33_t -B -S -q -b 100 -H -l /nfs/disk222/yeastpub/bio-soft/fasta/pubseqgbs
+#fastx=-I /nfs/disk222/yeastpub/bio-soft/fasta/fastx33_t -B -S -q -b 40 -H -l /nfs/disk222/yeastpub/bio-soft/fasta/pubseqgbs
+fasta=-I /software/pathogen/external/bin/fasta34_t -B -S -q -b 100 -H -l /nfs/disk222/yeastpub/bio-soft/fasta/pubseqgbs
+fastx=-I /software/pathogen/external/bin/fastx34_t -B -S -q -b 40 -H -l /nfs/disk222/yeastpub/bio-soft/fasta/pubseqgbs
+
 #
 #
 # Generic default options