new SO terms

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10993 ee4ac58c-ac51-4696-9907-e4b3aa274f04

etc/feature_keys_gff

@@ -11,7 +11,7 @@ region              ID Name Alias Parent Note Target Gap Derives_from Dbxref Ont
 #chromosome          ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified note comment description locus stable_id EC_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain topology localization gff_source gff_seqname score 
 gene                ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified locus stable_id EC_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain topology localization gff_source gff_seqname score private
 #CDS                 ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified codon_start description locus stable_id EC_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain topology localization gff_source gff_seqname score  results note comment job
-polypeptide         ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified description locus stable_id EC_number gene_symbol Ontology_term Dbxref product molecule_type size organism_name strain topology localization gff_source gff_seqname score mass isoelectric charge source private signal_peptide membrane_structure cytoplasm_location transmembrane non_cytoplasm_location GPI_anchor_cleavage_site comment curation
+polypeptide         ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified description locus stable_id EC_number gene_symbol Ontology_term Dbxref product molecule_type size organism_name strain topology localization gff_source gff_seqname score mass isoelectric charge source private signal_peptide membrane_structure cytoplasmic_polypeptide_region non_cytoplasmic_polypeptide_region transmembrane_polypeptide_region cytoplasm_location transmembrane non_cytoplasm_location GPI_anchor_cleavage_site comment curation
 pseudogene          ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified description locus stable_id EC_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain topology localization gff_source gff_seqname score private
 pseudogenic_exon    ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified description locus stable_id EC_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain topology localization gff_source gff_seqname score private
 pseudogenic_transcript ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id timelastmodified description locus stable_id EC_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain topology localization gff_source gff_seqname score product

etc/qualifier_types_gff

@@ -64,6 +64,7 @@ cons_splice      yes        (::)    5'site 3'site
 country          no         "text"
 cultivar         no         "text"
 cytoplasm_location no       "text"
+cytoplasmic_polypeptide_region no       "text"
 db_xref          no         "text"
 dev_stage        no         "text"
 direction        yes        list    LEFT RIGHT BOTH
@@ -93,6 +94,7 @@ membrane_structure no       "text"
 mod_base         no         modbase
 mol_type         no         "text"
 non_cytoplasm_location no   "text"
+non_cytoplasmic_polypeptide_region no   "text"
 note             no         "text"
 number           yes        number  1 99999999
 operon           no         "text"
@@ -135,4 +137,5 @@ tissue_type      no         "text"
 transgenic       no         "text"
 translation      no         "text"
 transmembrane    no         "text"
+transmembrane_polypeptide_region    no         "text"
 DNA_transposon   no         "text"
\ No newline at end of file