add wdir

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@3590 ee4ac58c-ac51-4696-9907-e4b3aa274f04

lib/j2ssh/j2ssh.properties

@@ -7,6 +7,7 @@ tblastx=-I /nfs/pathsoft/prod/perl/flexi_blast.pl -tx
 blastn=-I /nfs/pathsoft/prod/perl/flexi_blast.pl
 fasta=-I /nfs/disk222/yeastpub/bio-soft/fasta/fasta33_t -B -S -q -b 100 -H -l /nfs/disk222/yeastpub/bio-soft/fasta/pubseqgbs
 fastx=-I /nfs/disk222/yeastpub/bio-soft/fasta/fastx33_t -B -S -q -b 40 -H -l /nfs/disk222/yeastpub/bio-soft/fasta/pubseqgbs
+wdir=/nfs/pathscratch1/scratch
 %uniprot=%U
 %uniprot_archaea=%A
 %uniprot_bacteria=%B