make PubDbXRef.xml

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@10761 ee4ac58c-ac51-4696-9907-e4b3aa274f04

artemis_sqlmap/Pub.xml

@@ -9,9 +9,6 @@
  
   <typeAlias alias="Pub"
         type="org.gmod.schema.pub.Pub"/>
-  
-    <typeAlias alias="PubDbXRef"
-        type="org.gmod.schema.pub.PubDbXRef"/>
         
   <resultMap id="select-pub"
              class="Pub">
@@ -30,17 +27,6 @@
      <result property="pubPlace"    column="pubplace" />
      <result property="cvTerm"      column="type_id" select="getCvtermByCvTermId" />
   </resultMap>
-
-  <resultMap id="select-pubdbxref" class="PubDbXRef">
-    <result property="pub.pubId"   column="pub_id" />
-    <result property="dbXRef.accession"   column="accession" />
-    <result property="dbXRef.version"     column="version" />
-    <result property="dbXRef.description" column="dbx_description" />
-    <result property="dbXRef.db.name"     column="name" />
-    <result property="dbXRef.db.description" column="description" />
-    <result property="dbXRef.db.urlPrefix" column="urlprefix" />
-    <result property="dbXRef.db.url" column="url" />
-  </resultMap>
   
   <!-- SQL -->
        
@@ -51,14 +37,6 @@
   <select id="getPubByUniqueName" resultMap="select-pub">
     SELECT * FROM pub WHERE uniquename=#uniqueName#
   </select>
-
-  <select id="getPubDbXRef" resultMap="select-pubdbxref">
-   select pub_id, pub_dbxref.dbxref_id, 
-       accession, version, dbx.description AS dbx_description, 
-       db.name, db.description, db.urlprefix, db.url FROM pub_dbxref 
-       LEFT JOIN dbxref dbx ON pub_dbxref.dbxref_id=dbx.dbxref_id 
-       LEFT JOIN db ON db.db_id=dbx.db_id 
-  </select>
   
   <!-- WRITE BACK -->
   <insert id="insertPub" parameterClass="Pub">

artemis_sqlmap/PubDbXRef.xml

+<?xml version="1.0" encoding="UTF-8" ?> 
+ 
+<!DOCTYPE sqlMap 
+    PUBLIC "-//ibatis.apache.org//DTD SQL Map 2.0//EN" 
+    "http://ibatis.apache.org/dtd/sql-map-2.dtd"> 
+ 
+
+<sqlMap namespace="PubDbXRef"> 
+
+    <typeAlias alias="PubDbXRef"
+        type="org.gmod.schema.pub.PubDbXRef"/>
+
+  <resultMap id="select-pubdbxref" class="PubDbXRef">
+    <result property="pub.pubId"   column="pub_id" />
+    <result property="dbXRef.accession"   column="accession" />
+    <result property="dbXRef.version"     column="version" />
+    <result property="dbXRef.description" column="dbx_description" />
+    <result property="dbXRef.db.name"     column="name" />
+    <result property="dbXRef.db.description" column="description" />
+    <result property="dbXRef.db.urlPrefix" column="urlprefix" />
+    <result property="dbXRef.db.url" column="url" />
+  </resultMap>
+  
+  <!-- SQL -->
+ 
+  <select id="getPubDbXRef" resultMap="select-pubdbxref">
+   select pub_id, pub_dbxref.dbxref_id, 
+       accession, version, dbx.description AS dbx_description, 
+       db.name, db.description, db.urlprefix, db.url FROM pub_dbxref 
+       LEFT JOIN dbxref dbx ON pub_dbxref.dbxref_id=dbx.dbxref_id 
+       LEFT JOIN db ON db.db_id=dbx.db_id 
+  </select>
+    
+  <!-- WRITE BACK -->
+  <insert id="insertPubDbXRef" parameterClass="PubDbXRef">
+    INSERT INTO pub_dbxref ( pub_id, dbxref_id ) 
+    VALUES ( $pub.pubId$, $dbXRef.dbXRefId$ )
+  </insert> 
+</sqlMap> 
\ No newline at end of file

artemis_sqlmap/chado_iBatis_config.xml

@@ -75,11 +75,11 @@
 
   <!-- Identify all SQL Map XML files to be loaded by this SQL map.  Notice the paths  
          are relative to the classpath.  --> 
- 
 
   <sqlMap resource="artemis_sqlmap/Cv.xml" />
   <sqlMap resource="artemis_sqlmap/CvTerm.xml" />
   <sqlMap resource="artemis_sqlmap/Pub.xml" />
+  <sqlMap resource="artemis_sqlmap/PubDbXRef.xml" />
   <sqlMap resource="artemis_sqlmap/Feature.xml" />
   <sqlMap resource="artemis_sqlmap/Organism.xml" />
   <sqlMap resource="artemis_sqlmap/OrganismProp.xml" />