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Commit 9329e0b2 authored by tjc's avatar tjc
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fix for headers - removal of space

git-svn-id: svn+ssh://svn.internal.sanger.ac.uk/repos/svn/pathsoft/artemis/trunk@15827 ee4ac58c-ac51-4696-9907-e4b3aa274f04
parent d87b4c18
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...@@ -57,7 +57,7 @@ public class WriteVCFTest ...@@ -57,7 +57,7 @@ public class WriteVCFTest
{ {
StringWriter writer = getRegionWriter(true, 120768, 120777); StringWriter writer = getRegionWriter(true, 120768, 120777);
StringBuffer buff = new StringBuffer("> test.embl.gz 120768:120777\n"); StringBuffer buff = new StringBuffer(">test.embl.gz 120768:120777\n");
buff.append("cttgtcaagg\n"); buff.append("cttgtcaagg\n");
buff.append(">test.vcf.gz test.embl.gz 120768:120777\n"); buff.append(">test.vcf.gz test.embl.gz 120768:120777\n");
buff.append("tttgtcaagg\n"); buff.append("tttgtcaagg\n");
...@@ -74,7 +74,7 @@ public class WriteVCFTest ...@@ -74,7 +74,7 @@ public class WriteVCFTest
{ {
StringWriter writer = getRegionWriter(false, 120768, 120777); StringWriter writer = getRegionWriter(false, 120768, 120777);
StringBuffer buff = new StringBuffer("> test.embl.gz 120768:120777 reverse\n"); StringBuffer buff = new StringBuffer(">test.embl.gz 120768:120777 reverse\n");
buff.append("ccttgacaag\n"); buff.append("ccttgacaag\n");
buff.append(">test.vcf.gz test.embl.gz 120768:120777 reverse\n"); buff.append(">test.vcf.gz test.embl.gz 120768:120777 reverse\n");
buff.append("ccttgacaaa\n"); buff.append("ccttgacaaa\n");
...@@ -91,7 +91,7 @@ public class WriteVCFTest ...@@ -91,7 +91,7 @@ public class WriteVCFTest
{ {
StringWriter writer = getRegionWriter(true, 396835, 396845); StringWriter writer = getRegionWriter(true, 396835, 396845);
StringBuffer buff = new StringBuffer("> test.embl.gz 396835:396845\n"); StringBuffer buff = new StringBuffer(">test.embl.gz 396835:396845\n");
buff.append("tttttaggtat\n"); buff.append("tttttaggtat\n");
buff.append(">test.vcf.gz test.embl.gz 396835:396845\n"); buff.append(">test.vcf.gz test.embl.gz 396835:396845\n");
buff.append("tttt-aggtat\n"); buff.append("tttt-aggtat\n");
...@@ -108,7 +108,7 @@ public class WriteVCFTest ...@@ -108,7 +108,7 @@ public class WriteVCFTest
{ {
StringWriter writer = getRegionWriter(false, 396835, 396845); StringWriter writer = getRegionWriter(false, 396835, 396845);
StringBuffer buff = new StringBuffer("> test.embl.gz 396835:396845 reverse\n"); StringBuffer buff = new StringBuffer(">test.embl.gz 396835:396845 reverse\n");
buff.append("atacctaaaaa\n"); buff.append("atacctaaaaa\n");
buff.append(">test.vcf.gz test.embl.gz 396835:396845 reverse\n"); buff.append(">test.vcf.gz test.embl.gz 396835:396845 reverse\n");
buff.append("ataccta-aaa\n"); buff.append("ataccta-aaa\n");
...@@ -125,7 +125,7 @@ public class WriteVCFTest ...@@ -125,7 +125,7 @@ public class WriteVCFTest
{ {
StringWriter writer = getRegionWriter(true, 366785, 366795); StringWriter writer = getRegionWriter(true, 366785, 366795);
StringBuffer buff = new StringBuffer("> test.embl.gz 366785:366795\n"); StringBuffer buff = new StringBuffer(">test.embl.gz 366785:366795\n");
buff.append("tttcgcttttt\n"); buff.append("tttcgcttttt\n");
buff.append(">test.vcf.gz test.embl.gz 366785:366795\n"); buff.append(">test.vcf.gz test.embl.gz 366785:366795\n");
buff.append("tttTcgcttttt\n"); buff.append("tttTcgcttttt\n");
...@@ -142,7 +142,7 @@ public class WriteVCFTest ...@@ -142,7 +142,7 @@ public class WriteVCFTest
{ {
StringWriter writer = getRegionWriter(false, 366785, 366795); StringWriter writer = getRegionWriter(false, 366785, 366795);
StringBuffer buff = new StringBuffer("> test.embl.gz 366785:366795 reverse\n"); StringBuffer buff = new StringBuffer(">test.embl.gz 366785:366795 reverse\n");
buff.append("aaaaagcgaaa\n"); buff.append("aaaaagcgaaa\n");
buff.append(">test.vcf.gz test.embl.gz 366785:366795 reverse\n"); buff.append(">test.vcf.gz test.embl.gz 366785:366795 reverse\n");
buff.append("aaaaagcgaaaa\n"); buff.append("aaaaagcgaaaa\n");
...@@ -160,7 +160,7 @@ public class WriteVCFTest ...@@ -160,7 +160,7 @@ public class WriteVCFTest
{ {
StringWriter writer = getRegionWriter(true, 361975, 361985); StringWriter writer = getRegionWriter(true, 361975, 361985);
StringBuffer buff = new StringBuffer("> test.embl.gz 361975:361985\n"); StringBuffer buff = new StringBuffer(">test.embl.gz 361975:361985\n");
buff.append("actgaaaaatt\n"); buff.append("actgaaaaatt\n");
buff.append(">test.vcf.gz test.embl.gz 361975:361985\n"); buff.append(">test.vcf.gz test.embl.gz 361975:361985\n");
buff.append("actkaaaaatt\n"); buff.append("actkaaaaatt\n");
......
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